| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1748 |
|---|
| Symbol | |
|---|
| ID | 5052072 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | - |
|---|
| Start bp | 1819584 |
|---|
| End bp | 1821890 |
|---|
| Gene Length | 2307 bp |
|---|
| Protein Length | 768 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640471921 |
|---|
| Product | ATP-dependent Clp protease, ATP-binding subunit clpA |
|---|
| Protein accession | YP_001156525 |
|---|
| Protein GI | 145589928 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
|---|
| TIGRFAM ID | [TIGR02639] ATP-dependent Clp protease ATP-binding subunit clpA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCGCCC AAGAATTAGA AGTGAGTTTG CACATGGCGT TTGTTGATGC GAGAGCATCA
CGACATGAGT TCATTACTGT TGAGCATTTA CTAGCAGCAC TGCTTGACAA TGCAACGGCC
GTTGAGGTTC TCAAGGCTTG TGCAGTCAAT ATTGCTGAGC TTCGTACCCA ATTAAAAAAC
TTTATCAATG ACAATACTCC AGTGGTTCCT GGTAGTGATG AAGTCGATAC GCAGCCAACC
TTGGGATTTC AGAGGGTGAT TCAACGCGCT ATCATGCACG TGCAATCAAC CTCGAATGGA
AAAAAAGAAG TAACCGGTGC AAATGTATTG GTAGCGATCT TTGGAGAAAA AGATTCTCAC
GCGGTGTATT TCTTGCAACA GCAAGGCGTG ACCCGTTTGG ATGTAGTGAA CTTTATTAGT
CATGGCGTTC GCAAAGATCA GTCTGAGCAT GTCAAACCAG TTGAGTCATC TCAAGAGACT
GAAGAATCTG CGACCTCCGG AAAAGAAAGT CCCTTAGACC AATACACGCA AAACCTTAAT
GCCTTAGCTC GCCAAGGAAA AATTGATCCA CTCATTGGGC GCGAGAGTGA AGTAGAGCGC
GTAATTCAAG TGCTTTGCCG TCGTCGCAAA AACAATCCGC TGTTGGTTGG TGAGGCTGGC
GTTGGAAAGA CTGCTATTGC TGAAGGCTTA GCATGGAGAA TCGTCAAAGG TGATGTGCCT
GACATCTTGG CTGATGCCAC CGTCTACTCT TTGGATATGG GCGCTTTATT GGCCGGTACT
AAATATCGCG GTGATTTTGA GCAGCGTTTG AAAAGTGTTC TTAAATCCCT TAAAGATCAT
GCCCACGGTG TTTTGTTTAT TGATGAGATC CACACCTTAA TTGGTGCTGG CGCTGCCTCT
GGCGGCACTC TGGATGCGAG CAATCTATTG AAGCCTGCGT TGTCTAATGG CCAACTCAAA
TGTATTGGTG CCACTACCTT TACTGAATAC CGCGGTATCT TCGAAAAAGA TGCTGCGTTA
TCTCGTCGCT TCCAAAAGGT AGATGTGGTT GAGCCAACGG TAGATCAAAC AGTACAAATT
TTGCGCGGTC TTAAATCTCG CTTTGAAGAG CATCACGGCG TGAAATATGC TGCTGCTGCA
TTGGTGGCCG CCGCTGAACT TTCTTCACGC TATATTAATG ATCGCCATTT GCCTGATAAG
GCAATCGATG TCATTGATGA GGCTGGTGCT GCACAGCGTA TCTTGCCAAA GTCAAAGCAG
AAGAAAACAA TTGGTCGTCC AGAAATTGAA GAGATTGTCG CCAAGATTGC TCGCATACCG
CCACAATCTG TCACCGTGGA TGATCGCAGT AAGTTGCAAA CCCTGGATCG CGATATTAAG
AGCGTGGTGT TTGGTCAAGA TCCTGCCATT GAAGCTTTGG CTAGCGCCAT TAAGATGACG
CGCGCAGGCC TTGGAAAAAT TGATCGCCCA ATTGGATCTT TCCTTTTCTC TGGACCTACT
GGCGTAGGTA AGACTGAGGT GGCTAAGCAG CTCGCTTATA TCTTAGGCAT TGAACTCTTG
CGCTTTGATA TGTCTGAGTA CATGGAGCGT CATGCTGTGA GTCGTCTGAT CGGTGCGCCT
CCAGGTTATG TTGGTTTTGA TCAGGGTGGC TTATTAACTG AGGCAGTAAA TAAAAAGCCG
CATTGCGTGT TGTTGTTGGA TGAGATTGAA AAAGCCCATC CAGATATCTT CAACATTCTG
TTGCAGGTCA TGGATCACGG AACTCTTACA GACAATAACG GACGCAAGAC AGATTTCCGG
AATGTCATCA TCATCATGAC TACCAATGCG GGTGCTGAGG CGATGCAGAA GTCGACAATT
GGCTTTACCA ATGCTCGAGA GTCTGGTGAT GAAATGGCTG ATATTAAGAA GTTCTTCACT
CCAGAATTCC GCAACCGTCT AGACGCCATT GTTTCATTCA AGGCCTTGGA TGAAACCATC
ATCATGCGTG TTGTTGATAA GTTCTTAATG CAACTTGAAG AGCAATTGCA TGAGAAGAAA
GTGGACGCTA CCTTTAGCGC TGCTTTGCGC GCTCACCTTG CTAAGCATGG TTTTGATCCA
TTAATGGGTG CTCGCCCAAT GCAACGTATT ATTCAAGATA CAGTGCGTAA AGCGCTTGCT
GATGAGCTGC TTTTTGGTAA ATTGGCACAA GGCGGTCATG TCGCTGTTGA TATTGATGCG
GAGGGTAAAG TGCAGTTAGA TTTTGATGCC CCAGCATTGC CAGGCAAGAC GTCAAAAGCA
GATGCCACAC CAGTAGAAGA AATTTAA
|
|---|
| Protein sequence | MIAQELEVSL HMAFVDARAS RHEFITVEHL LAALLDNATA VEVLKACAVN IAELRTQLKN
FINDNTPVVP GSDEVDTQPT LGFQRVIQRA IMHVQSTSNG KKEVTGANVL VAIFGEKDSH
AVYFLQQQGV TRLDVVNFIS HGVRKDQSEH VKPVESSQET EESATSGKES PLDQYTQNLN
ALARQGKIDP LIGRESEVER VIQVLCRRRK NNPLLVGEAG VGKTAIAEGL AWRIVKGDVP
DILADATVYS LDMGALLAGT KYRGDFEQRL KSVLKSLKDH AHGVLFIDEI HTLIGAGAAS
GGTLDASNLL KPALSNGQLK CIGATTFTEY RGIFEKDAAL SRRFQKVDVV EPTVDQTVQI
LRGLKSRFEE HHGVKYAAAA LVAAAELSSR YINDRHLPDK AIDVIDEAGA AQRILPKSKQ
KKTIGRPEIE EIVAKIARIP PQSVTVDDRS KLQTLDRDIK SVVFGQDPAI EALASAIKMT
RAGLGKIDRP IGSFLFSGPT GVGKTEVAKQ LAYILGIELL RFDMSEYMER HAVSRLIGAP
PGYVGFDQGG LLTEAVNKKP HCVLLLDEIE KAHPDIFNIL LQVMDHGTLT DNNGRKTDFR
NVIIIMTTNA GAEAMQKSTI GFTNARESGD EMADIKKFFT PEFRNRLDAI VSFKALDETI
IMRVVDKFLM QLEEQLHEKK VDATFSAALR AHLAKHGFDP LMGARPMQRI IQDTVRKALA
DELLFGKLAQ GGHVAVDIDA EGKVQLDFDA PALPGKTSKA DATPVEEI
|
|---|
| |