Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_1561 |
Symbol | |
ID | 5053012 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | - |
Start bp | 1633260 |
End bp | 1634930 |
Gene Length | 1671 bp |
Protein Length | 556 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640471734 |
Product | major facilitator transporter |
Protein accession | YP_001156339 |
Protein GI | 145589742 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.86082 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTACAG CGCATAAAGC TACTCCGATG ACTGCCGAAG AGCGCAAAGT TATTTTTGCT TCCTCATTGG GTACGGTCTT CGAGTGGTAC GATTTTTTCC TCTACGGTTC ACTTGCGGCA ATTATTGCTA AGCAATTCTT CTCAGGGCTA GATTCTGGTT CTGCGTTCAT TTTCGCTTTG CTTGCGTTTG CCGCTGGTTT CATCGTGCGT CCATTTGGCG CATTGGTGTT TGGTCGCTTA GGTGATTTGA TTGGTCGTAA ATACACCTTC TTGGTCACGA TTTTGATTAT GGGCGGCGCT ACGTTTGTTG TTGGTTGCTT ACCAAACTAC GCCACTATTG GCGTTACTGC CCCTGTAATT TTGATTTCCT TGCGTATGCT TCAAGGTTTG GCTTTGGGTG GTGAGTACGG TGGTGCCGCT ACTTATGTTG CAGAACATTC CCCCGCTGGC AAACGCGGTG CTTACACCTC ATGGATTCAA ATGACGGCCA CTATTGGTCT GTTCTTATCT TTACTCGTGA TTTTGTTTAC CCGTGAATTC ACTGGCCCAG ACTTTGACGT GTGGGGCTGG CGTGTTCCAT TCCTAGTATC AATTGCCTTA TTGGCTGTTT CTGTATGGAT TCGTTTGTCC ATGAATGAGT CACCAGCCTT TAAGAAGATG AAAGAAGAGG GTAAGTTATC TAAAGCACCT TTGACAGAAT CTTTTGGTCA ATGGAAAAAC TTAAAAGTCG TGCTTTTGGC GTTATTTGGC TTAGTAGCTG GTCAAGCAGT GGTTTGGTAT ACCGGTCAGT TCTATGCACT GTTCTACCTT ACTCAAGTAT TGAAGGTAGA TCCTAAGACG GCTAACTTAT TAATGACAGC TGCTTTAGTT ATTGGCACAC CATTCTTCGT AGTGTTTGGT AGCTTGTCTG ACAAGATTGG CCGTAAAGTG GTGATTATGA GTGGCTTGTT ATTGGCAATT ATTTTATACA TCCCCAATAC ACCGGTGTCC ATCTTTAACG GCATTACTCA CTTCGCTAAC CCAGCGTTAG AAAAAGCAAT GGCAACAGCG CCAGCAACCA TTACTGCTGA TGTCAACGAG TGCTCCTTCC AGTTCAATCC TACAGGTACC TCTAAATTCA CTAGCTCATG CGATATTGCC AAACAAGTGA TGGCCTCTAA CTCTGCTAGT TACACTACTA TTCCAGCTCC AGCGGGCAGC GTTGCTGTGG TCAAGATTGG TGATGTAGAG ATTCCTGGCT ACTCAGCTAA GGGACTGGAT CCTGCTGAAG CAAAAGCGAA AGATGCTGAG TTTAAGAAGG CAATTCGTGA TGCTTTAACT AAAGAAGGTT ACCCAGTTAA AGCAGATCCA GCACAAATGA ATTATGTGAT GTTGGTTATT TTGCTTAGCA TTTTGGTAAT TTTGGCAACT ATGAGTTATG GACCCATCGC TGCAATGTTG GTTGAGATGT TCCCAACTCG TATTCGTTAC ACCTCTATGT CCTTGCCATA CCATATTGGT AACGGTTGGT TCGGCGGCCT CTTGCCAACG ATCTCCTTTG CCTTGGTTGC GCAAAACGGT AACATTTACT ACGGTCTCTG GTACCCAATC ATCATCGCTG CAATGACATT GGTAATCGGT GTTCTGTTTG TACGTGAAAC TAAAGATGTA GATATTCTCA ACATGGATTA A
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Protein sequence | MSTAHKATPM TAEERKVIFA SSLGTVFEWY DFFLYGSLAA IIAKQFFSGL DSGSAFIFAL LAFAAGFIVR PFGALVFGRL GDLIGRKYTF LVTILIMGGA TFVVGCLPNY ATIGVTAPVI LISLRMLQGL ALGGEYGGAA TYVAEHSPAG KRGAYTSWIQ MTATIGLFLS LLVILFTREF TGPDFDVWGW RVPFLVSIAL LAVSVWIRLS MNESPAFKKM KEEGKLSKAP LTESFGQWKN LKVVLLALFG LVAGQAVVWY TGQFYALFYL TQVLKVDPKT ANLLMTAALV IGTPFFVVFG SLSDKIGRKV VIMSGLLLAI ILYIPNTPVS IFNGITHFAN PALEKAMATA PATITADVNE CSFQFNPTGT SKFTSSCDIA KQVMASNSAS YTTIPAPAGS VAVVKIGDVE IPGYSAKGLD PAEAKAKDAE FKKAIRDALT KEGYPVKADP AQMNYVMLVI LLSILVILAT MSYGPIAAML VEMFPTRIRY TSMSLPYHIG NGWFGGLLPT ISFALVAQNG NIYYGLWYPI IIAAMTLVIG VLFVRETKDV DILNMD
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