Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_1539 |
Symbol | |
ID | 5053594 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | - |
Start bp | 1608294 |
End bp | 1609307 |
Gene Length | 1014 bp |
Protein Length | 337 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640471712 |
Product | TRAP dicarboxylate transporter, DctP subunit |
Protein accession | YP_001156317 |
Protein GI | 145589720 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.268114 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACATACA CAAGACGTGA CTTTATGAAG CATGCGGGTA TTGCAGCATT ACCTTTGGTA GCTGGCAACG CGTTTGCACA AACTGCAGAG TTCAATATGA AATTTGGTAG TAATTTACCT GCTACCCATC CATTGAATAT TCATGCATAT AAGATGGCCT CAAAAATTAA AGTGGAAACA AAGGGTCGCG TCGATATTCA AGTTTTTCCT TACAACCAAT TGGGTAACGA TACCGATATG TTGTCTCAGT TGCGTTCAGG CGCTTTAGAC TTCATGACTT TATCTCCATT GATCTTGGGT TCACTTGTGC CGCAAGCTCA GATCAACGGT GTAGGCTTTG CCTTCAAAGA TTACAAACAA GTATGGGCCG CAATGGATGG TGAATTAGGT GCTTATGTTC GCCGTCAAAT CGCCAACACA GGAACCATTT TTGCTTTCGA TAAGATTTGG GATAACGGTT ATCGTGAAGT GACTAATAGC GTTCGCCCAA TCAACAAGCC AGATGATTTA AAAGGTATTA AGTTACGTAC GCCTCCTGGC CCGATGTGGG TTTCTTTATT TAAGGCCTTG GGTGCAGCTC CAACCCCATT GAATTTTGCA GAGGTGTATT CAGCACTTCA GTCAAAAGTG GTAGATGGAC AAGAGAATCC TCTGGCGATT ATTTATACCG CCAAACTTTA TGAAGTTCAA AAATATTGCT CTATGACCAA TCATATGTGG GATGGCTATT GGTTTATGGG TAATAAGAAG TTATTTGAAC AATTGCCGCC AGATCTACAA GTAATCGTTA CCCGTAACGT GGCGGAGTCA GCGGTCCTGC AGCGTGCCGA TGTTCGTAAG ATGAATGATG GCTTGCAATC TGAATTGAAG GCTAAGGGCA TGGCGGTGAA CGATACCAAT CCAGACCCTT TCCGTGAAAA ACTTCGTCAA GCTGGTTTTT ATTCCGAATG GAAGGCTAAA TTTGGCGATG AGGCATGGTC TCTACTTGAA AAATATGTAG GCAAGTTAGC GTGA
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Protein sequence | MTYTRRDFMK HAGIAALPLV AGNAFAQTAE FNMKFGSNLP ATHPLNIHAY KMASKIKVET KGRVDIQVFP YNQLGNDTDM LSQLRSGALD FMTLSPLILG SLVPQAQING VGFAFKDYKQ VWAAMDGELG AYVRRQIANT GTIFAFDKIW DNGYREVTNS VRPINKPDDL KGIKLRTPPG PMWVSLFKAL GAAPTPLNFA EVYSALQSKV VDGQENPLAI IYTAKLYEVQ KYCSMTNHMW DGYWFMGNKK LFEQLPPDLQ VIVTRNVAES AVLQRADVRK MNDGLQSELK AKGMAVNDTN PDPFREKLRQ AGFYSEWKAK FGDEAWSLLE KYVGKLA
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