Gene Pnuc_1331 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_1331 
Symbol 
ID5053639 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand+ 
Start bp1408617 
End bp1410101 
Gene Length1485 bp 
Protein Length494 aa 
Translation table11 
GC content46% 
IMG OID640471503 
Productcarbohydrate-selective porin OprB 
Protein accessionYP_001156109 
Protein GI145589512 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCTCAC AAGGAAAATT TGAGGTTTTG ACCTACCGCA AGGATTCTTA CAGATTCGGC 
ATCAATATCA ATTTATGCCT ACTGAAAGGT CTACTTGTGA CCCTTTTTGT CCTGTGGACT 
TTCTTGTCTG CACATGCAGA AGCTCCGGTG AGCGACACAC CAATCCTACT TGCAGTGGCA 
CCTGTTAGTG ATCAGCCAGA AATAGATGCA CCTAATGCAG ATGAAGGTGA AACTGAGCAA 
TGGAGTATTC ATGGTCAGTC TACGTATATT GTTCAGCAAA AAAATAATTT CAATTCACCC 
TACTACGGAC AAAATAGTCT TTTAAATAAA TCTGAAGGGG GTGGCGGGAA GAGCTACACC 
TTCAGCGCAA CTGCTTTCTT GGGGGCAAGA CTTTGGGAAG GCGCAGAAGT CTATTGGAAT 
CCAGAGATGT TTGAGGGAAC CCCCTTTAAC GGACAACTTG TTGGCTTGGG CGGATTTCAG 
AATGGCGAGT TGCAGAAAGG ATCTTATGCA CCGCCTATCT ATTACACTGC CCGCGCATTT 
ATTAGACAAA CCTTTGGGCT TGGCGGCGGT AAGGAGCATA TTGAAGGCGC TCCAAATCAA 
CTGGCAGGCA ACGTAGATAA AAACAGGCTT GTAGTGAGCT ATGGCAAGTT TGCAACTTTA 
GACTTTTTCG ATCAAAACAG CTATAGCCAT GATCCTCGTA CCCAATTTCA AAACTTTGCC 
ATTTTTTCCA TGGGTGCCTA TAGCTATGCT GCAGACAGCA AGGGCTATAC CTATGGTGTT 
GTAGCTGAGT GGTATCAAGA GGACTGGATC TTAAAAATGG CTCGCTTGGC AATGCCAACT 
ATTCCGAATA CCGCTCAGCT TGATTACAGC TTGACCCAGG ATTATGGAAA TCAGATTGAA 
TTAACTCATG AGCATGAACT TTGGGGTAAA GCTGGCGCGG TGCGTGCACT CTACTATCAA 
CAGCATGCTT TTATGGGCAA CTACCAAAGT GCTGTAGATA TTGCCCAACA AACTAACTCC 
ACCCCCGATA TCACCAATAC TCGTCTTGCC GCCCAAAGCT CTTGGGGATA TGGCCTCAAT 
TTTGAACAGT CCATTTCAGA AGACATTGGG GTATTTGGTC GTTGGAGCTG GAACCCAGGC 
AACTCGGAAA CGCAAACGGT TGACATTAGC CGCTCTTTGT CTGGTGGCGT CAGCATTAAA 
GGTGCTAGCT GGTCGAGACC TAACGACTGC GTAGGCCTAG GTTTTGCGGT GAACGGAATC 
GCCCCAATTC AAAGGACCTA TCTGCAACTG GGTGGCATGT CCCCTTTTAT TGGGGATGGC 
AACCTGAGCT ATAAAACAGA ACAAATTCTT GAAACCTTCT ATAGCGCCAA AGTGTATAAA 
GAACTCTATA TTTCAGCGGA TTACCAACGC ATAGCCAATC CAGCCTATAA CTCAGCACGT 
GGCCCAGTGA ATTTCTTTGG ATTAAGAGCC CATATAGAGA TGTAA
 
Protein sequence
MISQGKFEVL TYRKDSYRFG ININLCLLKG LLVTLFVLWT FLSAHAEAPV SDTPILLAVA 
PVSDQPEIDA PNADEGETEQ WSIHGQSTYI VQQKNNFNSP YYGQNSLLNK SEGGGGKSYT 
FSATAFLGAR LWEGAEVYWN PEMFEGTPFN GQLVGLGGFQ NGELQKGSYA PPIYYTARAF 
IRQTFGLGGG KEHIEGAPNQ LAGNVDKNRL VVSYGKFATL DFFDQNSYSH DPRTQFQNFA 
IFSMGAYSYA ADSKGYTYGV VAEWYQEDWI LKMARLAMPT IPNTAQLDYS LTQDYGNQIE 
LTHEHELWGK AGAVRALYYQ QHAFMGNYQS AVDIAQQTNS TPDITNTRLA AQSSWGYGLN 
FEQSISEDIG VFGRWSWNPG NSETQTVDIS RSLSGGVSIK GASWSRPNDC VGLGFAVNGI 
APIQRTYLQL GGMSPFIGDG NLSYKTEQIL ETFYSAKVYK ELYISADYQR IANPAYNSAR 
GPVNFFGLRA HIEM