Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_1300 |
Symbol | |
ID | 5053146 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | - |
Start bp | 1371397 |
End bp | 1374474 |
Gene Length | 3078 bp |
Protein Length | 1025 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640471472 |
Product | CzcA family heavy metal efflux protein |
Protein accession | YP_001156078 |
Protein GI | 145589481 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3696] Putative silver efflux pump |
TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.187575 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAGTTTCG CAACGAATTT TCTAAGAGGT GTTTTAGACA AGCGCATACT AATCCTATTT GCCTCTGCGG TACTTTTATG CTTGGGAGCA TACAGCCTAA AGCAGCTGCC TATTCAGCCT TATCCAGGTG TAGCGCCATT AACTATCCAA GCAATTTCTC AGTGGCCAGG ACGCAGTACT ACTGAAGTAG AACAACAAGT TACGATTCCA GTAGAAAATG CTTTAGCAGG TATTCCAGGG GTTAAAGCAT TTCGCTCCGT TTCTTTATTT GGACTTTCTG TTGTCACGCT AAAATTTAAT GACAATGCTG ACCCCTTTAA GGTTCGGCAA ATTTTTATTT CTAATTTGGG AAATGTAACT TTTCCGCCGG GCGTAAGCTC AAGTGTGAGC CCTGATTCAG ATGCTACTGG CGAAATTCTT CGCTATCAAG TGAAATCAGA CTATGCATCC CCCACTCGTC TAAAGACTTT GCAAAATTAT GAGATCTACA AAGAGCTCAA ACAAACTCCA GGCATTGCAG ACGTTTCCTC TTTTGGCGGT AAGGTTCGTC AGTACAACGT AATCGTTCGA CCCGAAAGCC TGCAATCCAA AAATATCACT ATTTCTCAGT TAATTGATGC CTTATCGAAG GCAAATGACA ACACTGGAGG CGGCGTATTG CCAAGTGGTG AACAGCAATT TGTGGTGCGT GGGGTTGGCC TACTGAAGAA CTTGGACGAT ATTAGAAGAG TGGTTGTTGC TGTCAACAAC GGCGTTCCTG TTCGCATTGG TGATGTGGCC ACAGTTGAAA TTGGAAATGC TCCCCGCTTG GGTTTGTTCC AGTTTGATGA AAATCCAGAC TCGGTTGAAG GAATTGTGTA TTTACGTCGA GGTGAGAATG CCTCAGAAGT ATTAGCCCGC GTTAGAGAAA AGATTGTCAC GATCAATGCC CATGTATTGC CGCCGGGCAT TGAGGTTAAG CCTTTTTATG ATCGCCAGGT TCTCTTAGAT ATCACTGTGG GCACTGTTAA GCACACCATG TTTTTTGGCA TCACTATGGT TTTGGTTTTG CTTTACATAT TCTTGGGTAA TTTCCGGGCT GCCGCTGTCG TTGCAGCAGT TATTCCCCTG GCGCTGTGTT TTTCTTTCAT CATGATGTAC ATATTTAATG TACCAGCCAA CTTGATTTCT TTGGGTGCGA TTGACTTCGG GGTGATCGTA GATGCAGCTG TAATCATTAC GGAAAATGTG ATGCGTCACT TGGAAGAGGG CGGAAAGCGC TTGAATCAAA GCATTATTTT GGCGACTGCT GAAGTGCAAA GGGCTATGGT GTATTCCACC AGCATCATTA TTGTTGCTTA CTCACCATTA TTTTTAATGG GTGGTGTGGA GGGGATTATA TTTAAGCCGA TGGCCTTTAC GATGGGCTTT GCCTTGATTG CCTCGATTGT TCTGAGTCTC ACCTTCTTAC CCGCATCGAT TTCTTACGCG TTCGGTGAAA ATTTCCATCA TCAACCGCCT AAGTTTATTA CTTGGATACT CGACCATTAC AAGCCCTTAT TGCGGCGCTT AATGGATCAC CCTCGTCACG TCATTACTGT TTCTATTTTG GTGCTTGGCG TTACCTTAAT TAGTGCAACT CGTTTGGGTA CTGCATTTTT ACCCACCTTA GAAGAAAATA ACATTTGGCT TCGTGTTGTC CTGCCAAATA CTGTTGATTT AAATTATTCA ATTAGTGTTG CCAATCAGTT GCGAGAGACA TTCACAAGGC AGCCTGAGAT AGAGCGAGTG GCTGTTCAAA TTGGTCGCCC AGATGATGGA ACTGACTCTA CTGGAGTATT TAATCAGGAG TACGGTCTTT ATCTAAAGCC TCCTGAGCTG ATGCCGAAGG GGTCTAGTAA GGCAGATCTA TTGAAGCGCT TACAGGGTGA GCTGGAGCGC ATTCCTGGGA TTTCATTTAG TTTCTCTCAA TACATTCAGG ATAACGTGAA TGAGGCTCTG TCTGGGGTGA AGGGTGAAAA CTCTGTCAAG ATTTTTGGAA CAGACTTAAC AATTCTGAAC ACAAAGGCGC ATGAGGTCAT TGCCCAATTA AAGAAAGTGC GTGGCATTGA GGACGAAAGC ATTCTGAAGG AGCTGGGTCA ACCAACTTTA AATATTCAGA TTGATCGCGA TAAGGCAGCG CGATATGGGG TAAATGTGGC CGATGTGCAA ACTGTAGTTG CTAATGCCAT CGGTGGGGCC CCAGTTTCTA ATTTCCTGGA GGACGAAAAG ACGTTTGGCA TTGCTGTGCG TTTAAATGAA GATAGTCGAA ATGATTTGCC TGATATTGCC AATTTACTGA TTGACACTCC TGTTGGCTCC AGAGTGCCTT TGGGGATGGT AGCAAATGTA GAGCTTACAG ATGGTCCATT CTTTATATAT CGGGAAGCCG GTAAGCGTTA CATTGCGGTT ATTTTCAGCG TGCGTGATCG AGATCTTGGT AGCGCAGTCG AAGATGCCAA ATATTTAGTC GAGAAGAATG TAGCGCTACC TGCAAACTAT TCGATAGCCT GGGATGGTCA GTTTAATCAG ATGAAGGCGG CGCAACAAAA ATTAATGGTC ATCATTCCGC TCACGCTGGT GGCAATTTTC TTGTTGTTGG TAACTGCCTT GGGTAACTTC CGAGATGCGG TGATTGTTCT CATCAATGTC CCATTTGCAG CCATCGGCGG AATTATCGCC CTGCATCTTG GTGGCGAAAC GCTGAGTATT TCTGCTCTAT TTGGTTTCTT ATCTTTATTT GGTATTGCCA TTCAAGACGG CGTGATTCTG ATTTCTTATA TCAATAAGAC GGTAGCTGAA GAGCATGGTG CTATGAAAGA TGCCATGGTT GATGGCGCAG CTTTACGTGT TCGACCTGTT TTAATGACTG CGATGTTAGC GGGCTTGGGT CTCTTGCCTG CCGCCTTGTC TCATTCAATT GGTTCTGAAG CACAGCGCCC ATTAGCCCTC GTCATTGTAG GCGGCATGGT AACCACTACT ATTCTCACGC TCTTGGTGTT GCCGGTGATT TATGCGGCAA TGAGGGGTCG TGGCAAACAT AAACCAGGAA TCGTTTAA
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Protein sequence | MSFATNFLRG VLDKRILILF ASAVLLCLGA YSLKQLPIQP YPGVAPLTIQ AISQWPGRST TEVEQQVTIP VENALAGIPG VKAFRSVSLF GLSVVTLKFN DNADPFKVRQ IFISNLGNVT FPPGVSSSVS PDSDATGEIL RYQVKSDYAS PTRLKTLQNY EIYKELKQTP GIADVSSFGG KVRQYNVIVR PESLQSKNIT ISQLIDALSK ANDNTGGGVL PSGEQQFVVR GVGLLKNLDD IRRVVVAVNN GVPVRIGDVA TVEIGNAPRL GLFQFDENPD SVEGIVYLRR GENASEVLAR VREKIVTINA HVLPPGIEVK PFYDRQVLLD ITVGTVKHTM FFGITMVLVL LYIFLGNFRA AAVVAAVIPL ALCFSFIMMY IFNVPANLIS LGAIDFGVIV DAAVIITENV MRHLEEGGKR LNQSIILATA EVQRAMVYST SIIIVAYSPL FLMGGVEGII FKPMAFTMGF ALIASIVLSL TFLPASISYA FGENFHHQPP KFITWILDHY KPLLRRLMDH PRHVITVSIL VLGVTLISAT RLGTAFLPTL EENNIWLRVV LPNTVDLNYS ISVANQLRET FTRQPEIERV AVQIGRPDDG TDSTGVFNQE YGLYLKPPEL MPKGSSKADL LKRLQGELER IPGISFSFSQ YIQDNVNEAL SGVKGENSVK IFGTDLTILN TKAHEVIAQL KKVRGIEDES ILKELGQPTL NIQIDRDKAA RYGVNVADVQ TVVANAIGGA PVSNFLEDEK TFGIAVRLNE DSRNDLPDIA NLLIDTPVGS RVPLGMVANV ELTDGPFFIY REAGKRYIAV IFSVRDRDLG SAVEDAKYLV EKNVALPANY SIAWDGQFNQ MKAAQQKLMV IIPLTLVAIF LLLVTALGNF RDAVIVLINV PFAAIGGIIA LHLGGETLSI SALFGFLSLF GIAIQDGVIL ISYINKTVAE EHGAMKDAMV DGAALRVRPV LMTAMLAGLG LLPAALSHSI GSEAQRPLAL VIVGGMVTTT ILTLLVLPVI YAAMRGRGKH KPGIV
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