Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_1291 |
Symbol | ispG |
ID | 5053627 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | - |
Start bp | 1362628 |
End bp | 1363899 |
Gene Length | 1272 bp |
Protein Length | 423 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640471463 |
Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
Protein accession | YP_001156069 |
Protein GI | 145589472 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0220337 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCTCGA ATAATTCTTT ACCAAAGTTA CCATTAGGAC CATCCCCTAA GAGAGCAACA CGTCAAGCAA CGGTTGCCTG GAAAACAAAC GTTATTACGG TTGGTGGCAA CGCGCCAGTC CGCGTGCAGT CTATGACAAA TACCGATACT GCCGATGTAA TTGGCACTGC GATTCAAGTA AAAGAATTGG CTCGCGCTGG TTCAGAGATG GTGCGGATTA CTGTAGATAC GCCAGCTGCT GCGGCAGCCG TGCCTTACAT TCGTGAACAG CTAGACAAGA TGGATGTGTT GGTGCCGTTG ATTGGCGACT TTCATTACAA CGGCCATACT TTATTAAATG ATTTTCCAGA GTGCGCTAAA GCACTCTCCA AATATCGCAT CAATCCAGGC AATGTGGGTA AGGGCGCTAA GCGTGACCCA CAATTTGCGC AGATGATTGA AGTGGCCTGC AAGTACGACA AGCCAGTCCG CATTGGTGTG AATTGGGGTA GCTTGGATCA AGAGCTGTTA GCGAGCATTA TGGATAGCAA CGCAGCACTA GCTACCCCAA AGACAGCTCA AGAAGTCATG ATCGAAGCAT TAATTCAATC GGCCTTGCAG TCTGCAGAAA AAGCAGTAGA GCTGGGTATG AATCCAGACC AAATTTTGCT GTCTTGCAAG GTGAGTAATG TGCAGGACTT GGTAGCTGTT TATCGCGATC TCTCACGTCG CTCTGATTAC CCGCTCCATT TAGGCTTAAC TGAAGCAGGC ATGGGAAGCA AAGGGATTGT TGCTTCGACA GCAGCTATGG GTATTTTGTT GCAAGAGGGT ATCGGCGATA CGATTCGAGT GTCATTAACC CCTGATCCTG GCGCGCCACG TGAGAACGAG GTGATTGTTG CTCAAGAGAT TTTGCAAACC ATGGGATTAC GTAATTTCAC ACCAATGGTT ATTGCCTGTC CAGGTTGTGG CAGAACAACT AGTACGACAT TCCAAGAGTT AGCAGCCAAT ATTCAGTCCT ATTTGCGCCA ACAGATGCCG GTTTGGAAAA AGACCCATCC TGGTGTGGAA GAAATGAATG TGGCTGTGAT GGGCTGCATT GTCAACGGCC CCGGCGAGAG TAAGCATGCC AATATAGGTA TTTCTTTGCC GGGAACGGGT GAAACACCCG CCGCCCCCGT ATTTGTCGAT GGTGTCAAAG TAAAAACATT GCGCGGCGAA AACATTGCGC AGGAGTTTCA GGTGATTGTT GATGATTATG TGAAACAGAA CTACGCAGCA AAAGTTGACT AA
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Protein sequence | MSSNNSLPKL PLGPSPKRAT RQATVAWKTN VITVGGNAPV RVQSMTNTDT ADVIGTAIQV KELARAGSEM VRITVDTPAA AAAVPYIREQ LDKMDVLVPL IGDFHYNGHT LLNDFPECAK ALSKYRINPG NVGKGAKRDP QFAQMIEVAC KYDKPVRIGV NWGSLDQELL ASIMDSNAAL ATPKTAQEVM IEALIQSALQ SAEKAVELGM NPDQILLSCK VSNVQDLVAV YRDLSRRSDY PLHLGLTEAG MGSKGIVAST AAMGILLQEG IGDTIRVSLT PDPGAPRENE VIVAQEILQT MGLRNFTPMV IACPGCGRTT STTFQELAAN IQSYLRQQMP VWKKTHPGVE EMNVAVMGCI VNGPGESKHA NIGISLPGTG ETPAAPVFVD GVKVKTLRGE NIAQEFQVIV DDYVKQNYAA KVD
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