| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1261 |
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| Symbol | |
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| ID | 5052380 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 1326664 |
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| End bp | 1330656 |
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| Gene Length | 3993 bp |
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| Protein Length | 1330 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640471432 |
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| Product | ATP-dependent helicase HrpA |
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| Protein accession | YP_001156039 |
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| Protein GI | 145589442 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.949394 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCCTGCCT CCAACACCCG GCGCAAGCTA GAAATCCGCT TTCCGGAAGA ATTACCTGTC
TCAGGTCAGC GTCAGATCAT CAAGGATGCC CTGCAGAGCC ACCAGGTAGT GATCGTATGC
GGTGAGACGG GTTCAGGTAA GACCACCCAG CTTCCAAAGA TCTGCCTAGA TCTGGGTCGT
GGGACGATCA ATGGCGGCAA GCTAATCGGC CACACACAGC CTCGCCGAAT TGCAGCCACT
GCCACAGCAA AGAGAATTGC TCAAGAGCTA GGCTCTCCTA TTGGTCAGGA TGTGGGCTAC
CAAGTACGCT TTGCTGACAA GACTAGTCAT AGCGCTTCAA TCAAGTTGAT GACTGATGGC
ATCTTGCTGG CTGAAACTCA GCGCGATCCT CAACTACGTG CCTATGACAC ACTCATTATT
GATGAGGCTC ATGAACGTAG TCTCAATATT GATTTCTTAT TAGGTTATTT GCGCCAGCTG
CTGCCCAAGA GGCCAGATCT TAAGCTGATC ATCACCTCAG CAACCATTGA TGCCCAGAGA
TTTGCAGAGC ACTTCGCCAT AAATGGCAAA GTCGCACCAG TCATTGAAGT GAGCGGCCGT
TTGTTCCCAG TAGAGCAGCG TTACTCACCC TTGGAACCAG ACGCTAAACC TGATGGTAAA
AAGGCATCCA AGGCTGCCAA GGAAATTTCG GATGCGGTGA CAGAAGAGAT TGCGAGCTTA
TGGCGTGAAG GTGCCGCTGG TTCAGGAGAT GTGCTGGTTT TTTTACCGGG CGAACGTGAG
ATCCGAGATT GCGCGGAAGC TTTGCGCAAG GACCACGTGT TGCAGCAACG CTTTCACCCA
GAGATTTTGA GTTTGTTTGC CCGTCAATCG GTTGCGGAGC AAGAAAGAGT ATTCAGCCCA
GGAAATGGAC GCCGCATCAT TTTGACGACC AACGTTGCCG AGACCTCTTT AACCGTTCCT
AATATTCGTT ATGTCATTGA CAGTGGCTTG GCACGGGTAA AGCGCTACTC CTATCGCAAT
AAGGTAGAGC AACTCCAGAT TGAGTCCATC TCTCAAGCGG CGGCCAATCA AAGGGCAGGC
CGCTGCGGTC GTGTCTCGGA TGGTATCTGC GTACGTCTCT ATAGTGAGCT GGATTATCAA
AGCCGCTCTC AATTTACCGA CCCTGAAATT CTGAGAAGCT CTTTGGCTTC AGTGCTTCTA
CGTATGAGTT CATTGCGTTT GCCTAAGATT CAACACTTTC CTTTTATTGA TAAACCTTTA
GGAAGAGCGA TTGCCGATGG TGTGCAACTT CTAGATGAGT TGGGCGCCAT TGAATTTGAC
GAATCTGAGC CGGCAGATGG AAAAGATATT AACAATAGCT TTAAGCTCAC CGCCATTGGT
AAGCAATTAG CAGATTTACC GCTTGACCCC TGTATTGGCA GAATGCTTTT AGCGGCAAAA
GAACAGAACG CCTTAAAAGA AGTGACCATT ATTGCTTCTG CATTAGCTAC GCAAGACCCT
CGCGATCGCC CCATGGATCA AGCTACGGCG GCAGATCAAG CTCATTTGCA GTTTGCGGAT
GAACGCTCAG AGTTTTTGAG TTTCGTTAAG CTGTGGAATT GGTATCAAGA TGCTTTGCAA
CATAAGCATA GCAATCGTCA GCTAGAGACT CTCTGTAAAA GTAAATTTCT GTCACCGCGC
CGTCTGCGTG AGTGGCGTGA TATTCATGGT CAGTTGCACA CGATGTTAGG CGAGAAGGGC
TGGAAAGAGA ACGGCTTAGC TGCAACTTAT GAGCAGGTAC ATCTATCCCT GCTAACGGGT
TTGCTTGGTT ATGTTGCCAA AAAAGAAGAG GATGAAAAAT CCCAAGACCG CAATAGCAAA
ACCGGCGGGT ATGTTGGCGC ACGTGGGATT CGCCCCTTTA TTTGGCCGGG ATCAACGATA
GGTAAAAAGG CAGGCGCCTG GATTCTGGCT GGTGAGCTAC AAGAAACCAA TCGCATGTAT
GCACGCACGA TTGCCAAAAT AGAACCCCAA TGGGTGGAAC GAGTTGCTGC ACATCGCCTG
ATCAAATCCC TCAGTGATCC ATTTTGGGAC AACCGCCAAG GTGAGGTCAT GGCCTTTGAG
AGGGGCACTT TATATGGCTT ACCCATCTAC CATGGTCGCC GAGTCCGTTA TGAGCCCCAT
AACCCCGATG AAACGAGAGA ATTATTTATT CGCCAGGCTT TAGTGCAAGA AGAGATGTTT
GGGCGCATGG ATACTCCAGC ACTTCAGCGA GAGACCGAAA CAGATGCCAA GAAAAAGTAT
CCCAATCTCT TTAACTTCTT TTGGCATAAC CGTCGACTTA TTAAAGAAAT TGAAGCGCTA
GAGCATCGCT CGCGTCGCCC TGATGTATTG GTAGATGACG ATCTACTCTT TGCCTTTTAC
GACTCCAGAA TTCCAAAAGA GGTGCGTAGT CGTGAAAGTC TCAAAGCATG GTTTAGTAAA
GACCCTGAAT TAGATAGTCA GCTCCGCTTA GAAAAAGCCG ATTTGATGCG ACATGAAGCG
GCTGGTATCA CAGTAGATCG TTATCCTAAA AATATGTTGG TAGGTGGTGC ACAGCTCAGT
CTGACTTATC ACTTTGAGCC CGGCAGCCCT AAGGATGGTG TGACGCTAGT CGTTCCTTTG
ACCCAACTAA ATCAGGTGGA TGGCCGCCGT TGTGAATGGT TAGTGCCTGG CATGTGTGAG
GAAAAGGTTC ATCTATTGCT TAAATCATTG CCCCAGAAGT TACGACGTCA CTGTGTGCCG
CTACCCGATT ATGCAAAATC TTTTCTTGAG CGAAAACTAG AAGAGAAGCA ATTTGGAGTA
GGCGACTTTC TAGATAGCCT CATTAGTGAC ATCCGCAAAG AGCGCGGGCT CGAAATTAAA
CGTACAGACT TTAGGCCTGA ATCTTTGCCG CTGCACTCAT CAATGAACTT TCGCCTCATT
GACGAACATG GCCGTCAGTT GGAGGTAGAG CGTAACTTAT CTCGCTTGCG TTCCGAGTAT
GGTGAGACGG CCCGTAGCGC CTTCCAGGCA ATAGCCCAAG AGACTGCGCA AGTAGAGTTA
GGTGTTGAGC CTACCCAGAA GGCTGGCAGT AACAGCTCTA ACGAGGCTAA TGCCCGCAAG
GTAGAGCAGG GCGGCTATCG CGCATGGGAA TTTGGTGAGC TACCTGAAAC TTTAGAGATT
CAAAAAGGCA ACAAAACTTT ATTTGGCTAT CCCGCTTTAG TGGACCGTAT CGATTATTGT
GATCTAGAGG TATTTGATGA TCTGCTGGAG GCTCGTAAAC AGCATGCTTT AGGATTGCGT
CGCTTGTTTG CGTTGAGTAA TAAAGATACG CTCAAGGCAT TACAAAAACA GTTGCCCGGC
ATTCGAGAAT TGGGATTGCT TTTTATTAAT GTCGGTTCAG TAGAAGGTTT AATAGATCAC
ATTCTCAATC TTGCACTCGA GCGTGCGTTC ATGGGTGAAT CCCTTCCAGT AAACGCCGAA
CAATTTACAG AGCGATTGCA AGCAGGTAAA CCTAGGTTAG CGCTGATTGC CCAAGAGATT
TCTCGTCATG CTTTAAATGC ATTGCAGGCC CATGCAGATC TTCAGAAAAA GATAGCCAGT
GCAAAAGCCG CCTCACCAAG TGCTTATGCT GATATTCAAG CGCAGATGCA GGGATTAATC
TTTCCGAAGT TTGTGGCTGA TATACCTTAT GCCCAATTGG TTCATGTGCC ACGGTATTTA
AAAGCGATTG CGATGCGAAT TGATAAATTA CGCTCTAACC CGAGTCGCGA TGCTCAGTGC
CAGAAAGACT GGGAATCCGT TGCACGTCCA TGGCAAAAGC TCATGCAAGG AAATAAAGGG
GCTGCTTCGT ATGCAATGAC TGAAGACCAG GCCTTAACTG ATTTTCGATG GCAGCTAGAA
GAGTTACGGG TAGCTTTATA TGCTCAGGAG CTTAAAACAC CAACCCCTAT GTCCTTAAAG
CGTCTCGAAA AGGTTTTAGC CAGCTTGCGC TAG
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| Protein sequence | MPASNTRRKL EIRFPEELPV SGQRQIIKDA LQSHQVVIVC GETGSGKTTQ LPKICLDLGR
GTINGGKLIG HTQPRRIAAT ATAKRIAQEL GSPIGQDVGY QVRFADKTSH SASIKLMTDG
ILLAETQRDP QLRAYDTLII DEAHERSLNI DFLLGYLRQL LPKRPDLKLI ITSATIDAQR
FAEHFAINGK VAPVIEVSGR LFPVEQRYSP LEPDAKPDGK KASKAAKEIS DAVTEEIASL
WREGAAGSGD VLVFLPGERE IRDCAEALRK DHVLQQRFHP EILSLFARQS VAEQERVFSP
GNGRRIILTT NVAETSLTVP NIRYVIDSGL ARVKRYSYRN KVEQLQIESI SQAAANQRAG
RCGRVSDGIC VRLYSELDYQ SRSQFTDPEI LRSSLASVLL RMSSLRLPKI QHFPFIDKPL
GRAIADGVQL LDELGAIEFD ESEPADGKDI NNSFKLTAIG KQLADLPLDP CIGRMLLAAK
EQNALKEVTI IASALATQDP RDRPMDQATA ADQAHLQFAD ERSEFLSFVK LWNWYQDALQ
HKHSNRQLET LCKSKFLSPR RLREWRDIHG QLHTMLGEKG WKENGLAATY EQVHLSLLTG
LLGYVAKKEE DEKSQDRNSK TGGYVGARGI RPFIWPGSTI GKKAGAWILA GELQETNRMY
ARTIAKIEPQ WVERVAAHRL IKSLSDPFWD NRQGEVMAFE RGTLYGLPIY HGRRVRYEPH
NPDETRELFI RQALVQEEMF GRMDTPALQR ETETDAKKKY PNLFNFFWHN RRLIKEIEAL
EHRSRRPDVL VDDDLLFAFY DSRIPKEVRS RESLKAWFSK DPELDSQLRL EKADLMRHEA
AGITVDRYPK NMLVGGAQLS LTYHFEPGSP KDGVTLVVPL TQLNQVDGRR CEWLVPGMCE
EKVHLLLKSL PQKLRRHCVP LPDYAKSFLE RKLEEKQFGV GDFLDSLISD IRKERGLEIK
RTDFRPESLP LHSSMNFRLI DEHGRQLEVE RNLSRLRSEY GETARSAFQA IAQETAQVEL
GVEPTQKAGS NSSNEANARK VEQGGYRAWE FGELPETLEI QKGNKTLFGY PALVDRIDYC
DLEVFDDLLE ARKQHALGLR RLFALSNKDT LKALQKQLPG IRELGLLFIN VGSVEGLIDH
ILNLALERAF MGESLPVNAE QFTERLQAGK PRLALIAQEI SRHALNALQA HADLQKKIAS
AKAASPSAYA DIQAQMQGLI FPKFVADIPY AQLVHVPRYL KAIAMRIDKL RSNPSRDAQC
QKDWESVARP WQKLMQGNKG AASYAMTEDQ ALTDFRWQLE ELRVALYAQE LKTPTPMSLK
RLEKVLASLR
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