Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_1250 |
Symbol | |
ID | 5053932 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | - |
Start bp | 1315274 |
End bp | 1316560 |
Gene Length | 1287 bp |
Protein Length | 428 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640471422 |
Product | transposase IS116/IS110/IS902 family protein |
Protein accession | YP_001156029 |
Protein GI | 145589432 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3547] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0325438 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTGACC ACTTAAACAA TAAACCCTTT GGGGCATGGA TTGCAATCGA TATTGCCAAG GACTTTAATG CCGTGTTAAG CGAGACCAAG GCGGGTAAAA GGCAGCATTT TCGGATGGCT AATTCTGCTG CCGATCATGA TCGTTTTATT GCTTTTCTAA AGAGCTTACC GCCGCCTTGC ATTATTGGGT TTGAGGCAAC CGGCAATTAC CACCGCGCAT TAGGGCATCG CTTGGTAGCG GCGGGGTTTG AAGTCTGTTT TATTTCCTCG GTAGCGAGCG CCCGGTATCG GGAGGTGATG TTCAACTCCT GGGATAAAAA TGATCCCAAG GATGCTGCAG TGCTTTTAGA GCTGCTTAAG CAAGGGATTA CTCAACGTTA TGTTGACCCA TTAATTGCAG GGCATCATGA TCTCCAAGAG TTATCTAAAA CCTACTATCA AGTGACCTTG AGTCGCACGC GCCTGCAGCA TTCCATCCTC ACTCATTACC TGCCTTTGTA TTTTCCGGAG ATGGGTAAAT GGTGGAACAG TACTCGCGCA GACTGGTGGA TTAATTATCT TTTGCGCTTC CCCATCCCTA GCGCAGTAAC GAAGCACTCT CAAGAAGCGT TTTGCGAGAT TGCCAGCCCT GTCATTGGCC GCAAGGTTAA TAAAGCGGCT AAGCTTATTG AGCTCTATGA GACCGCCTTG CATAGCATTG GACTACCTGT TGAGGCAGAT TCCTTGGCTT GCAAAACCTT TCAAATACAA CTGAGACGCT ATCAAGAGAT CAATGCTTGT CGCAAGCAAT TAGAAGAGAC GGCTCAAGCA GTATTGGCCG ATAACCCGGA CTCTGCCATC TTGCAAAGTG TTCCGGGGAT TGGCCCGATT AATGCCCTAA CGATTCTGGC GGAAGGCGGG GATCTACGTC GCTTTAGCCA TCATCGTCAG TTCTTGAAGT ATTGTGGGTT TGATCTAGCC AAAAATCAAT CAGGCAACTA TCGTGGTCAA GAACAAATCT CCAAACGAGG TAATGCGCGT TTACGTTTGG CGTTATGGAT GGCAGTGAAC ACTGCTATCG CTCAACCAGA AAATAGTTTC CAGCAAAAAT ATAGCCGCTA TATTAAAGGC GCACCACAGG ATAAGGATTT ACAGCGCAAG GCTAGGACTG CGGTGGCAGC GAAGATGGCG CGTGTAGTGT ATGGATTAGT GAAGTCAAAA CAGATGTATC AAGGTTACTA TGAAAAAGCT TTACCCAGTG GATCGATCCC TCTCTGTAGG GCCGTAGAGG CCGCAAGGAC CTCGTAG
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Protein sequence | MADHLNNKPF GAWIAIDIAK DFNAVLSETK AGKRQHFRMA NSAADHDRFI AFLKSLPPPC IIGFEATGNY HRALGHRLVA AGFEVCFISS VASARYREVM FNSWDKNDPK DAAVLLELLK QGITQRYVDP LIAGHHDLQE LSKTYYQVTL SRTRLQHSIL THYLPLYFPE MGKWWNSTRA DWWINYLLRF PIPSAVTKHS QEAFCEIASP VIGRKVNKAA KLIELYETAL HSIGLPVEAD SLACKTFQIQ LRRYQEINAC RKQLEETAQA VLADNPDSAI LQSVPGIGPI NALTILAEGG DLRRFSHHRQ FLKYCGFDLA KNQSGNYRGQ EQISKRGNAR LRLALWMAVN TAIAQPENSF QQKYSRYIKG APQDKDLQRK ARTAVAAKMA RVVYGLVKSK QMYQGYYEKA LPSGSIPLCR AVEAARTS
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