Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_1228 |
Symbol | nusA |
ID | 5053470 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | - |
Start bp | 1289930 |
End bp | 1291411 |
Gene Length | 1482 bp |
Protein Length | 493 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640471400 |
Product | transcription elongation factor NusA |
Protein accession | YP_001156007 |
Protein GI | 145589410 |
COG category | [K] Transcription |
COG ID | [COG0195] Transcription elongation factor |
TIGRFAM ID | [TIGR01953] transcription termination factor NusA [TIGR01954] transcription termination factor NusA, C-terminal duplication |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00625796 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCCGAG AAGTTCTCAT GTTGGCAGAC GCCCTAGCGC GTGAAAAGAA CGTTGATCAA GCTATTGTGT TCGAGGCGCT CGAAATGGCG CTAGCATCGG CCACTAAGAA GCGTTATGCA ACTGAAGATG TAGATATTCG TGTTTCCATT GACCGTGAGT CTGGTGAATA CGAAACCTTC CGACGTTGGT TGGTTGTTCC GGATGAGGCA GGTCTTCAAG AGCCTGATAA AGAGATTTTG CAATTCGAGG CAAAAGAACA ACTGTCAGAT ATTGAGGTTG GTGACTACAT CGAGGAGCAA ATCGAATCTT TAGCTTTTGG ACGCATTGGC GCGCAAGCTG CTAAGCAAGT GATCTTGCAA CGTATTCGTG ATGCTGAACG TGAACAGATT TTGAACGACT ACCTTGAGCG TGGCGAAAAA GTCATGACTG GTACTGTCAA GCGTGCTGAC AAAAATGGTT TGATTATTGA ATCAGGTCGT GTTGAAGCAT TGCTTCGTCG CGATCAAATG ATCCCTAAAG AAAATTTACG TTCCGGTGAC CGTGTACGCG CATACATCCT TAAAGTGGAT CGCGAAGCAC GTGGCCCACA AATCGAACTC TCTCGTACTT GCCCAGACTT CTTGATCAAG TTGTTTGAAA ACGAAGTTCC AGAGATGGAG CAGGGCTTAC TAGAGATTAA GGGCGCAGCT CGTGACCCTG GTATCCGTGC CAAGATTGCT GTTATTACTT ATGACAAGCG CATCGACCCA ATCGGTACTT GCGTTGGTGT ACGCGGCACT CGTGTGACTG CAGTACGCAA TGAAGTTGCT GGTGAGGCAG TGGACATTGT GTTGTGGTCT GAAGATCCAG CGCAATTCGT GATTGGTGCT TTGGCTCCAG CTCAAGTATC TTCAATCGTT GTTGACGAAG AGCGTCATGC GATGGATGTG GTTGTTGATG AAGAGAATTT GGCTATTGCG ATTGGCCGTA GCGGACAGAA CGTTCGTTTG GCGAGCGATT TGACGGGTTG GCAAATCAAC ATCATGACTC CTGAAGAGTC TGCTGAGAAA ACTGAAAAAG AAGCATCTTC TGTACGTCAA TTGTTTATGG ACAAATTGGA CGTTGACCAA GAAGTGGCTG ATATTTTGAT TGAAGAAGGC TTTAATACGT TAGAAGAAGT GGCCTACGTA CCATTGTCTG AAATGTTAGA GATTGATTCA TTCGATGAAG ATACTGTGAA TGAGTTGCGT ACACGCGCAC GTGATTCTTT GTTGACGATG GAGTTGGCAA AAGAAGAGCG TATTGGCGAA GTGTCACAAG ACTTACGTTC CTTAGACGGA ATGACTACAG AATTGATTGC CAAGCTTGCT GACAATCAAG TACATACCCG TGACGACCTT GCTGAACTAG CTGTTGATGA GCTGGTTGAG GCGACACAAA TTGACGAAGA AACTGCGAAA ACGCTCATCA TGAAAGCGCG CGAACATTGG TTTACTTCAT GA
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Protein sequence | MSREVLMLAD ALAREKNVDQ AIVFEALEMA LASATKKRYA TEDVDIRVSI DRESGEYETF RRWLVVPDEA GLQEPDKEIL QFEAKEQLSD IEVGDYIEEQ IESLAFGRIG AQAAKQVILQ RIRDAEREQI LNDYLERGEK VMTGTVKRAD KNGLIIESGR VEALLRRDQM IPKENLRSGD RVRAYILKVD REARGPQIEL SRTCPDFLIK LFENEVPEME QGLLEIKGAA RDPGIRAKIA VITYDKRIDP IGTCVGVRGT RVTAVRNEVA GEAVDIVLWS EDPAQFVIGA LAPAQVSSIV VDEERHAMDV VVDEENLAIA IGRSGQNVRL ASDLTGWQIN IMTPEESAEK TEKEASSVRQ LFMDKLDVDQ EVADILIEEG FNTLEEVAYV PLSEMLEIDS FDEDTVNELR TRARDSLLTM ELAKEERIGE VSQDLRSLDG MTTELIAKLA DNQVHTRDDL AELAVDELVE ATQIDEETAK TLIMKAREHW FTS
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