Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_1225 |
Symbol | |
ID | 5053218 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | - |
Start bp | 1285853 |
End bp | 1286761 |
Gene Length | 909 bp |
Protein Length | 302 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640471397 |
Product | tRNA pseudouridine synthase B |
Protein accession | YP_001156004 |
Protein GI | 145589407 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0130] Pseudouridine synthase |
TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.886706 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTACGC GTATCGATGG CGTAGTGTTG CTGGATAAAC CCGCCGGAAT GAGTTCCCAA GGTGCGGTTA CTGCAGTCAA ACGCGCCTTC AATGCTGACA AGGCTGGTCA TACAGGTACT TTAGATCCTA TGGCGACTGG CTTGCTGCCC ATTTGCTTGG GTGAGGCTAC TAAGTATTCT CAGGACTTAT TAGAAGCCGA TAAGACTTAT ATTGCTCAAG TGAAATTCGG CTCGCGTACT GATACAGGTG ATGCAGAGGG TCTCATAATT GAAGAGCTTC CATTACCCGC ATTTGAAAAT GATGCGGCAT TGCTGAAATT ATTGGAATCC TTATTGCCAA AGTTTACTGG CCTAATCTCT CAAGTGCCCC CAATGTATTC CGCTTTAAAG CGAGATGGCA AACCTTTATA TGAGTACGCA CGTGCTGGTG TGGAGTTAGA GCGTGCGCCA CGTGATATCA CCATCCATAA AATTCGTTGG ACGAATGTTC AATGGCCAGA GGCTACATTA GAAGTAAGCT GTAGTAAGGG TACTTATATT CGTGTTTTGG CTGAAGATCT TGGTAATGCT TTAGGTTGTG GCGCACATTT AGTGGGCTTA CGCCGAACTG AAGTAGGGCA TTTAACCTTG GATCAATCTT TCACAATTGA ATCGATTCAA AATGGCGGAA AAGATAGTTC TAGTTATATC TTGCCGGTAG ATGCTTTATT GCAGACCTTG CCTCATCTAA CAGTTGATGA GCAACAGGCA AAACGTTTGG AAATGGGTCA GCGGGTACCG TTAAACCTTC CCTCCATTGA AGCTTTAGTG CGTATTTATC GCGCTACTGC TGCACCCCAT AACTTTATTG GTACTGCGGA TTGGCGCTCG GGAGTATTAC ATCCCAAGCG CTTGATTTCT CAGGCTTAG
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Protein sequence | MSTRIDGVVL LDKPAGMSSQ GAVTAVKRAF NADKAGHTGT LDPMATGLLP ICLGEATKYS QDLLEADKTY IAQVKFGSRT DTGDAEGLII EELPLPAFEN DAALLKLLES LLPKFTGLIS QVPPMYSALK RDGKPLYEYA RAGVELERAP RDITIHKIRW TNVQWPEATL EVSCSKGTYI RVLAEDLGNA LGCGAHLVGL RRTEVGHLTL DQSFTIESIQ NGGKDSSSYI LPVDALLQTL PHLTVDEQQA KRLEMGQRVP LNLPSIEALV RIYRATAAPH NFIGTADWRS GVLHPKRLIS QA
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