| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1222 |
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| Symbol | |
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| ID | 5053202 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 1280317 |
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| End bp | 1282671 |
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| Gene Length | 2355 bp |
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| Protein Length | 784 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640471394 |
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| Product | RNA-binding S1 domain-containing protein |
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| Protein accession | YP_001156001 |
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| Protein GI | 145589404 |
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| COG category | [K] Transcription |
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| COG ID | [COG2183] Transcriptional accessory protein |
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| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.923017 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCCCAT CGATTGAACA ACGTCTTGCC CTAGAACTTT CTGCTAAACC CAACCAAGTG
GCTGCTGCAG TTGCTTTATT GGATGAGGGT GCAACGGTAC CCTTTATTGC CCGTTATCGT
AAAGAGGCAA CTGGGGGGCT TGATGATGTG CAGTTGAGAT TATTAGAGGA GCGTCTAACT
TATCTGCGTG AGTTAGAGGA CCGCCGCAAA ACTATTGTTA CTTCAATCGA AGAGCAGGGC
AAGATGACTC CTGAGTTGCT TAAAGCCATT ATGTTGGCTG AAGATAAAAC ACGCTTAGAG
GATTTGTATC TACCGTATAA GCCAAAACGC AGAACCAAGG CTCAAATTGC TTTGGAGGCT
GGCCTAGAGC CCTTGGCAAA TGATCTATTG GCTAACCCAA ATCTAAATCC AGAAGCAGAG
GCTGCCAAAT ATCTTAAGGA AGCTTTTAAG ATTGAGGAGA CCGAGAACCC TGGTGTGCCT
GATACCAAAA CTGCACTAGA GGGTGCGCGA CAAATCTTGA TGGAGCGCTT TGCTGAGGAT
GCTGCTCTAG TTCAATCATT AAGAACTTAT TTGCAAGATC ATGGCGTAGT TGAGTCCAAG
GTGATTGCTG GTAAAGAACA AGAGGGTGAG AAGTTTTCGG ATTACTTTGA TTATTCTGAA
TCTATCAAGG CAATTCCTTC GCATCGTGCC CTAGCTTTAT TTAGAGGGCG CCGCGAACAG
ATGTTGATGG TATCTTTGCG TTTGGATAGC GAAGAAGAAA AGCCTAAATG GGATTCCCCA
CACAATCCTT GTGAAATGCG TATTGCTACG CATTTCAAGA TTAAAAATGA TGGCCGTCCT
GCCGACCAAT GGCTTGCAGA TACAGTACGC TGGACATGGC GTATTAAATG CTCACTCCAC
CTAGAGACTG AACTCATGAC CGCCCTCAGG GAGCGCTCTG AAGCCGAGGC AATTCATGTG
TTTGCGCGCA ATCTCAAAGA TCTTCTCTTG GCTGCGCCAG CTGGTCCACG GGTGACTATT
GGTTTAGATC CTGGTATGCG AACTGGTGTC AAGGTGGCAG TAGTAGATGC GACTGGAAAA
GTAGTGGATA CCGATGTCAT TTACCCACAT CAACCCAAAA ATGATTGGAC TGGCTCACTT
CTAACCTTAG CCAAGCTTGC TGAGAAACAT CATGCTACAT TAATTTCTAT TGGCAATGGT
ACCGCCTCGC GTGAGACAGA TAAATTAGCG CAAGATTTGA TTAAAGCAAA GCCAGAACTT
GGTTTAACCA AGATAGTGGT TTCAGAAGCG GGCGCTTCTG TCTATTCAGC TTCTGAATAT
GCATCTAAGG AGCTTCCAGG AATGGATGTT TCTTTGCGTG GCGCGGTGTC AATTGCACGC
CGTTTACAAG ATCCTCTAGC TGAGTTAGTA AAGATTGATC CCAAGTCGAT TGGTGTTGGC
CAATATCAGC ATGATGTCAT GCAAACGCAA TTGGCAAAAT CCTTAGTCGC AGTCGTGGAG
GATTGCGTCA ACGCGGTTGG TGTCGATGTT AATACCGCCT CAGCGCCATT GTTATCTAGG
GTTTCAGGAC TTTCCAGCAC GGTAGCTGAA GGTATTGTTG CCTATCGCGA TAGTAAGGGT
GCATTCAAAT CCAGATCTGA TCTGAAAAGT GTTCCACGCT TAGGTGATAA AACTTTTGAA
CAGGCCGCTG GCTTTTTGCG CATCATGAAT GGTAATGATC CATTAGATGC TTCTGCAGTA
CATCCAGAGT CTTATCCCTT GGTGGAAAAA ATTCTCAAAG ATATTAAAAA AGGCGTGAAA
GAAGTCATTG GCGATGCCAG TTTACTTAAG TCACTTTCAC CAGAAAAATA TGCTGACGGT
CAATTTGGTT TACCTACAGT GACTGACATC CTCAAGGAAT TAGAAAAGCC GGGTAGAGAC
CCACGACCAG AATTTACCAC TGCTACCTTT AAAGAGGGTG TCGAGAAAAT AAGCGATCTC
AAAGCGGACA TGATCCTCGA AGGTGTAGTG ACTAACGTGG CCGCTTTTGG TGCTTTCGTG
GATATTGGTG TTCATCAAGA TGGCTTGGTA CATATTTCCG CCTTATCTAA TACGTTTGTG
AAGGATCCAC ATACCGTTGT CAAAGCGGGC CAGGTAGTGA AGGTAAAAGT TCTTGAGGTA
GATGAAAAGC GCAAAAGGAT AGCCTTGACA ATGCGTCTTT CAGATGAAGC GCCAAAAGCG
GGATTTAAAC CTGAACAGCG AGCCCCAAAT CGACCCAAGG GGGCGGAAGT CAGAAAGCCT
CAAGAAGATA GACGCCAACA GTCAGCGCCG ATGAATAATG CCATGACGAT GGCCTTAGCC
AAGCTCAAAA AGTAA
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| Protein sequence | MLPSIEQRLA LELSAKPNQV AAAVALLDEG ATVPFIARYR KEATGGLDDV QLRLLEERLT
YLRELEDRRK TIVTSIEEQG KMTPELLKAI MLAEDKTRLE DLYLPYKPKR RTKAQIALEA
GLEPLANDLL ANPNLNPEAE AAKYLKEAFK IEETENPGVP DTKTALEGAR QILMERFAED
AALVQSLRTY LQDHGVVESK VIAGKEQEGE KFSDYFDYSE SIKAIPSHRA LALFRGRREQ
MLMVSLRLDS EEEKPKWDSP HNPCEMRIAT HFKIKNDGRP ADQWLADTVR WTWRIKCSLH
LETELMTALR ERSEAEAIHV FARNLKDLLL AAPAGPRVTI GLDPGMRTGV KVAVVDATGK
VVDTDVIYPH QPKNDWTGSL LTLAKLAEKH HATLISIGNG TASRETDKLA QDLIKAKPEL
GLTKIVVSEA GASVYSASEY ASKELPGMDV SLRGAVSIAR RLQDPLAELV KIDPKSIGVG
QYQHDVMQTQ LAKSLVAVVE DCVNAVGVDV NTASAPLLSR VSGLSSTVAE GIVAYRDSKG
AFKSRSDLKS VPRLGDKTFE QAAGFLRIMN GNDPLDASAV HPESYPLVEK ILKDIKKGVK
EVIGDASLLK SLSPEKYADG QFGLPTVTDI LKELEKPGRD PRPEFTTATF KEGVEKISDL
KADMILEGVV TNVAAFGAFV DIGVHQDGLV HISALSNTFV KDPHTVVKAG QVVKVKVLEV
DEKRKRIALT MRLSDEAPKA GFKPEQRAPN RPKGAEVRKP QEDRRQQSAP MNNAMTMALA
KLKK
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