Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_1187 |
Symbol | |
ID | 5053141 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | + |
Start bp | 1245892 |
End bp | 1246662 |
Gene Length | 771 bp |
Protein Length | 256 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 640471360 |
Product | ABC transporter related |
Protein accession | YP_001155967 |
Protein GI | 145589370 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1116] ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.2493 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGCCAAA ATCCGCCACG CACGCACGTC ACTATTGGGA ACTTATGCAA GGAATTTGGT GGTGCAACTC TTTACAAAGA CTTTAACCTT GAAATTCCGT ATGGAAAGAT TATTTCTATA TTTGGGCCTA ATGGTTGCGG AAAATCTACT CTTATTAATA TGATCGCAGG GCTAATGCCC TATGACTCCG GTCAGGTCTT GTTTGATGGA AAAGATTTAA AAGATACTAA GATTGGGTAT GTCTTTCAAA ACTACAGAGA CGCTCTATTT CCATGGATGA GTTCCCGGGA CAACATAGCC TATCCGCTAA GGCGGACTGG AATGAGCGAG GCTAAAGTAA GTGCTCGCGT TGAAGAATTA GTTCAGCTAT TTGAAATACG CTTCAATCTG GATCTATACC CTTATGAGCT TTCTGGTGGA CAACAGCAAA CCATATCAAT CATGCGGGCC TTAGCGCCTA AGCCAGAGAT ACTCTTCTTA GATGAGCCGT TCTCAGCCTT AGACTTTGAA ATGACGCTCT TTATAAGAGA AAAACTGCAA GAGGCGAACA TTACCACCGG TACAACAATG ATGATCGTCT CCCATGATCT TGAAGATGCA GTCTTTCTGG CCGATGAAAT TTTGCTTCTT ACAAGAAGAC CAACGGCGAT TGCCTCTCTT TTATATTTTG ATATGCCAAA ACCACGTCTT CCTGAAGCAG TAAGTCATCC TGATTTCATT CAGATCAAGT CAAAAGCCCT TGAAATCTTT CAAGCAGAAA TGCGAAAATA A
|
Protein sequence | MSQNPPRTHV TIGNLCKEFG GATLYKDFNL EIPYGKIISI FGPNGCGKST LINMIAGLMP YDSGQVLFDG KDLKDTKIGY VFQNYRDALF PWMSSRDNIA YPLRRTGMSE AKVSARVEEL VQLFEIRFNL DLYPYELSGG QQQTISIMRA LAPKPEILFL DEPFSALDFE MTLFIREKLQ EANITTGTTM MIVSHDLEDA VFLADEILLL TRRPTAIASL LYFDMPKPRL PEAVSHPDFI QIKSKALEIF QAEMRK
|
| |