Gene Pnuc_1178 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_1178 
Symbol 
ID5053522 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand- 
Start bp1236978 
End bp1237796 
Gene Length819 bp 
Protein Length272 aa 
Translation table11 
GC content44% 
IMG OID640471351 
Producthypothetical protein 
Protein accessionYP_001155958 
Protein GI145589361 
COG category[R] General function prediction only 
COG ID[COG0730] Predicted permeases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAATTG TTGATATAGC TTGGTTGATG CTAGGTGGAA GCCTATCTGG ATTTTTAGCG 
GGCCTATTGG GAATTGGAGG CGGAGTAATT TTAGTTCCGC TTATGATTCT GATATTTGGC 
CGTTTGGGCT TTAATGAAAA TATTCTGATG CATATGGCAA TTGCTACAGG TATGGCTAGC 
GTGTTATTTA CTACTTCTTC GGCCGTAATG GCTCATCAGA AACGCGGCAA TATTAATTGG 
AAACTAGTTA TTGCCTTATC CCCCGGCCTT GTCTTGGGAG CAGTAGTTGG GGGCGGCAAA 
TTTTTTGATG TCATTAATGG GGCTTGGCTA TCGCTAGGAT TTTCGATTTT TATGCTTTAT 
TCATCCACCC AAATGATTCT GAATAGGTCT CCTCATGCTG CACGAGCTTT GCCTGGAACC 
TTTGGGCTCT TTGCTTTTGG TGTGTTGACG GGTGTGATTG CGAGTCTATT GGGTGCGGGC 
GGCGCTTTTA TTACAGTCCC ATTTATGATT TGGTGCAATA TCAAACCTCA TAATGCAATG 
GCCAACTCCT CGGGCTTAGG TTTTCCAATT GCTGCATCAT CTACATTGGG TTATATCTAT 
GGAGGTTGGG GTAATGCATC TTTGCCTGAG TACTCTCTTG GCTATGTGTA TGTACCCGCC 
TTATTGTGCA TTGTTATTAC GAGCATGCTT GCTGCACCGC TCGGGGCAAG AGTGGTGAGC 
AAATTAGAGG CGCCTAGATT AAAGCGTATT TTTGGATTCA CCCTTTTTCT TGTTGCATTA 
TTCATGCTCA ATGAAAGTAG AAAGGCGTTT GGGTATTAA
 
Protein sequence
MSIVDIAWLM LGGSLSGFLA GLLGIGGGVI LVPLMILIFG RLGFNENILM HMAIATGMAS 
VLFTTSSAVM AHQKRGNINW KLVIALSPGL VLGAVVGGGK FFDVINGAWL SLGFSIFMLY 
SSTQMILNRS PHAARALPGT FGLFAFGVLT GVIASLLGAG GAFITVPFMI WCNIKPHNAM 
ANSSGLGFPI AASSTLGYIY GGWGNASLPE YSLGYVYVPA LLCIVITSML AAPLGARVVS 
KLEAPRLKRI FGFTLFLVAL FMLNESRKAF GY