| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1149 |
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| Symbol | |
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| ID | 5052469 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 1197574 |
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| End bp | 1204227 |
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| Gene Length | 6654 bp |
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| Protein Length | 2217 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640471320 |
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| Product | filamentous haemagglutinin outer membrane protein |
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| Protein accession | YP_001155929 |
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| Protein GI | 145589332 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
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| TIGRFAM ID | [TIGR01901] filamentous haemagglutinin family N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAATAGCA TCGGAAGGCA ATCTTCCTTT TCTCTTTCTT GCGTTACCAA TTCTTTGTTG
AAGCGGACGA AGAGCGTACT GACACATTCT CTTTTTCTGA TAGCGTATGC AGGACTCTCT
CACGCAGCCG CTCCCGTGCC AGCACCCACA GCAAAAACCC TCCCCACCGG CGGTCAGGTA
GTCGCTGGCA GCGCCACAAT TAGTTCTTCA TCCACAGCGA ATACTGCTGT GATGAATATC
AACCAAACCT CACAAAGAGC AGTAGTGAAC TGGGATAGTT TTAACGTTGG TAAAAACGCC
ACGGTGAACT TTAATCAACC GAACTCTTCT GCAGTCACTC TCAATCGCGT GACGGGTGGT
AATGCTTCAG TCATTAATGG CGCCATCCAC GCTAATGGCC AAGTCGTACT CGTTAATGAA
AACGGGGTGG TCTTTGGTAA GGGTGCGCAG GTTAATGCAG CAGCAGTCAC TGCCTCTACT
CTGAACATCG CCGATCAAGA GTTCATGGAT GGTAAGAGTA CTTACAAAGA TGATGGCATT
GGAGTAGGTT CAAATGCCGG CAAGATCATC AATAAAGGCA AGATCCAAAC CAATAATGAC
AATGGTGAAG GTGGCTTTAT TGCTCTATTA GCCCCAGAAG TGCGTAACCA AGGTTATCTC
TTAGCCCAAA AAGGCGGCAC GGTTGCTATT GGCTCTGGCT CTCAAATCAC TCTGCATATC
CAAGGCCAAA CTTTAGTAGC CATCAAAGTC GATGAGAGTG TCTATAACGG CCTGATCACC
AATAAACGCA TTATCGAAGC CCCCGGTGGT TTAGTGGTTT TGGCTACTGG AGCAGCCAAT
CAACTGATGG CAGGAGTCAT TAAGAACACA GGCCGCATTG CTGCCAATAG CTTAGAGAGC
AACGGCGGGG TGATTGAGTT GGTAGCTAAA AACATCACCC AATCTGGGCA AGTGAGCGCA
AATAGCCAAA CCAAAGAGGG TGGTCAAGTC AATCTGGTTG CTAGTGAGAT TACGCTTACT
AAGAACTCCA AGACCACAGC CACTGGCGCA GCCGGTGGGG GCCAAGTCAA TATTGGTTTA
GCTAGCACCC AAGTATCTGG TGGTGCCCAA GTCAACACCC CAACTCCAGT GGCAATCAAG
GCCAATGCCA ACCAAGCAGC CCAAACGAAT CAGCTAGCCA ATACGGTTGC TGTGCAAGAG
AGCGCCACAA TTGATACTTC AGCTACCCAA ACAGGTAACG GCGGATCGAT TGCGATCTGG
TCCAAGGTAC AAACCACAGT GGCTGGCATC CTTAAATCCA TGGGCGGGGC AATCTTAGGT
AACGGCGGCT TTATCGAAAC CAGCTCCCAA GGCCAAGTTG TTCTAGCCCC AACGGCAAGC
ATCAATACCA GCGCAAACAA CCCAACTGGC AAAGCCGGCA CTTGGCTCTT AGATCCGATT
GACCTGATCA TCAACAGTGA TGCTGCCAAT GTAATCGCCA ACGCCTTAGC AAACACCAAT
GTGACCATTG CAGTTACCAA CAGCACCACT GCTTGCCCCA TTGGAAGTTG TACTCAAACT
AATGTCAGTG GCGCCAACAG CAGTCTGACT ATTGCTAGTG GCGCCGATAT CCTCAAATTG
GGCACCAACT ACACCACGCT CACTCTCTCA TCAGAAGGCA TCTTTAATCT CAATGCCAAT
ATCAGTGGTC AGAATCTTGA TGTGATCATC AGCTCTTCGA TTGCCTATCT GAACGTAGGT
AGCTCCATTA ATGCCTCCAA AGTAACCGTC CAAGCTCAAA CAATCTATAG CGCTGGCAGC
ATCCAAACCA GTAATTACCT CCTAGGCGCA AACCCAGGAT CTTTAGGTAA TGCCATCGCC
TTATTAGCCC AAGCCATTTA TGTGTCAGGC AGACTATCAG CTAATGCCAT AGGCAAAGTA
GCTGGCAGCA TTACGCTCAC CGCCAACACT ATCAAGCTAT ATCCAAATGC AGTGTTAGAA
GCCAATGGTG ATGAAGGTGG CCAAATTACG GTTGCTGCCA ATGACTCCCT CTGGAGTAGC
GCTACAGTGC AAGCCAATGG TGGAAACGGT AGGGGAGGAA CACTGTCCTT AACCGCAGCA
AACGATCAAT ACTTTGACCA ATCGGCATTA CAAGCAAACG GCACTACCGA TGGTGGCGCC
ATCACGATCA CTACCCAAAG TGGTGACATC TCCTTTGCTA ACTCCCTCAT CCAAACCAAC
GGCTCGACTG GTCGTGGCGG TAGCATTAGC CTATCGGCTA CTAACATTAC CCAAATTGCT
AACAGCAATA TCAGCGCAAA CGGGTACTCC CAAGGTGGCA CAATATTAAT AGGCAATGAC
GCTAGTAACG GTTCATTGCC TTTTTCTATG GCGACCACCA TTGATGAAAA GACCGCTATC
AATGCAGCCC AGTTAGACCC CAATCCCACC AACCAACACG GTGGTTTTAT TGAAACCTCG
GGTCACACTC TAAACCTGCT GGCAACTATT AATGCTGGTA GAGGGGGGAT GTGGTTGTTG
GATCCGAATG ATATTTCAAT AGAGGCGCTA CCAGTTTTAG GTGGGACACC CTTTGCATAT
GTAAGTGGCT CTTCATACAC CTATACGGCA GGGGCTAGTA GCGTGGTGTA TACCGCCCTG
ATTACTTCTG CCCTGGCTAC TGCGGATGTC ATCATTACTA CAGCGTCAGG CAATATTACT
GTTAACGGTG CGATTAGCGG AGTTCGCTCA TTAACCCTTC TTGCTAGCTC TGGAAATATT
CAATTAAATG CAGGTATTCA GTTAACCGGT GCAGGATCCT CCATTGTTCT AAAGGCAAGT
GGTTATATCT CTACTGCTGG TGCAAATACC TATTTGACCA ATGGTGGCGA TGTCATTTTT
TGGTCTAACA CTGGAAATGT AACTAGTACT ACCGCAACAA ATGCCAATTT TATTTACCTT
GATTCAGGTA CAAAACTTAT GACTGTCGGG GGCGCCATTT ATCTTGCAGG TGGCTTACCT
TCTATAGGTA CTACATCTAA TGGAAACAAC TATCCAACTG GGTATGCATT TACTGGCAGT
GTAAATTCTG GAGTTCTATT GGGGTCTTAT GCTGGTAACG GCATTCCCAT CATCATCAAG
TCTGATGGCG GCAATATAGT GATTGCTGGA CAAACAACTA ATACTAATCT GCCGGGCTTT
AGTAGCCAAT CTTCTCTGTT GATTGATTCA GGAATGGGCA CAATTTCGCT AACGGGAACT
GCACATAATG GCCATGGTAT TGAGTTGGGC TATGGCTCTG CTTATTCAAA TATTGTGATT
ACTTCCGCGT CATCGTCACC CACAGCAATT CAGATCAACG GGACGACAGA TGGCGGTTCG
GGCTATAAAG GCTTCTGGGC GATCCATCTT GCTGGCTCCG CTACGCCAGG TGTTTTAATT
CAGGCAACAG GATTTGGAGG TGGTGTTTCA CTTACTGGAA TCAATACGCC AAGTGGTATT
GGGGTGTATT TAAGCGATAT TGCCATTCTT GCGAACAATG GCCCAATTCA AATCAATTCA
ACCGCCCTTG TAACTCAATC GACCTCATCG TTTCTCGGGG CTTGTTCAGG CACTGCGAAT
CCTTGTGCTT CTTTCGCCAT AGGTGACAAT ACATACACGC CAATTACTAA CTCTTCTTCT
AATATTGCAA TTAATGTGGA TGCTAGGAAT GCAGGCGGGG TCTCTTGGAA CGGGGTATTG
ACTGTTGATA CCACCGGCGG TCTAACAATT GCACCCTACA CAACTGACGG CTGGGCCACA
ACCCCATTTA CATGGTCTGG AAGCAATGCT CTCTCGGGTG GAATAGCTAC ATTTACTGCA
GATGCAAATA GTTTCATTGG CGTAGCTGAT AAGCTAATGA TTAAGAAAAT TACTAGTCTT
ACTATTGGTG CATCCGACTC CACCAATACG GTGAATATTA ACCAAGACAC CGGCCCCTTT
GGAAATCTCT CAGTTCATGC CGGAAATATC AATATTAATG CGCCAATCCA TTGGGTATCT
GATGAAGCTA TCAATTTGAT TTCATCTGGC AATATTTCCG TTAATGCTGA TTTAGTCGGC
CCCTCAAGTG GGTTAACTGC TGTCTATGGC GGCACTTATT CTTGCTCTGT TTGTTCCTCT
TACTATGTAC TTTTAAATCC GGGTTCCAGC GTTTACGGTA GCGTACCAAA TCTGACTTAC
GGAATTTATA CTAGCGCCGC AGGGACAACA TTAGCTTCAA GCGCAATTTC TAGCCTTGTT
TCTGGTACGG CTAGTTGGAG TGGAGTCATG CCCGACTCAA CTTCTTCAGT TGGATCCTAT
CCTTTAAGTT ACTCATCTGG ACTTTCTATC TCTAGTTTGT CTTATAGTCT GATTGCAGGT
AATCTAAACA ATTGGACTAT TACTCCAGCA CCATTGGGTA TTAAAGTTAC TGCAACATAC
ACGAGCGGTA GTGTATTTAC TCCCAGCAAT AGCGTTATTG CAGCAACTGG TTTAATGGCA
GGGCAGACCA TTACGAGTCT TCAGGCGAAC TCTTCTAATG TAGGCCCTGG AAATTTTGTA
ACTACCAGTG GATTGATTGG GGCAGGCGGT TTTCTAGCTA GCAACTATGC GATGTATGCT
GGAAGTGAGG TAGGGAATTC TGGGGTGTTG GCTGGCGGTT TATACAGCGG GACAGTATCG
GGCGCTACAA ATTCAGGCGG AACAAACACC GTCAATATTA ATAGAGCTAA CCTCGCCATT
ACTGCTAATC CTAGCCCCTC TGGAAATGTG TATAACGGCA ACGCATACAA CGGTAGTTAC
ATAACCAATG CCTTGGGATC TGACCAGGGA TTGATGACCA TCTCAGGCGT TGCTACTGGA
GTTAATGCTG GAACTTATAC CTCTAACTTA GCTGTTAATG GCGCTGTCCT CTCTAACTAC
AACACGCCGG TAATTACTAA TGCGAATTTA GTGATCTCAC CAAAACCAAT TACGATTACC
GATATTGCAA GTCGTACCAT TTACGATGGT GTAACAAATT ACGCCACCTT GATGGCTAAT
GCGGGTTATA CACTGAGCTC AGCATTGGTG GGTAGCGATA CGATTGGTGC AATCAATCAA
ACAGCTTCAT CAGTTGGTGG TACTTCATTT TCTGGTATCG CTCAGGCTGG TATTTTCTTT
AGCACTCCGA GCGCCGCTGT TTTATCAATT GGTAATGCCA ATAACTACCT TTTCTCTTAT
GCAACTGCTA GCAATACTGT TGCCAAGGCT AGCCTCACCA TTGCTGCAAT ACCCAATCTC
ACGGGGAACG TTTACAACGG CTCTACTTAT AACGGTACCT ATGTAACAAA TGCTTTGGGC
TCTGATCAAG GCTTGATGAC TATCTCAGGT ATTGCTTCTG GAGTTGATGC TGGAATCTAT
ACCTCTAATT TAGCAGTTAG CGGTTCAGTG CTATCTAACT ACAACAGTCC AGTGATTAGA
AATGCGAATT TAGTGATCAC TCCTGCGCCG TTAGTTATCA AAGCGAATGA CTTAGCAAGA
GTGGCAGGGA CTGCTTTTTA TGGCGGTAAT GGTGTGACCT ATACCGGTCT CCTGAATGGG
GAGTCACCCT CAGTACTCTC AGGGGTATTA ACGTATTCTG GATCAGCTCA AGGCGCAAGT
AATGCGGGGG CTTATGTAAT CCAACCCGGC GGTTTGACTA GTCAAAATTA TTCTATCGGA
TTTATTAGCG GTGTTTTAGT GAATACTCCA CAGCCAGTGG TTAATGCGAT TACTCCGCCA
CCGCCGCCTC CACCTCCTCC AATGGTTTTT AGTATTGCGC CTCCTCCACC CCCACCGGCA
GCAGCTGCGA TGGTGTCCAT AGCCCCGCCA CCACCTGCTG CTGAAGCTGG GTCCGGGGGA
CGAGAAGTTG CTCCTCCACC TGTCGCTGCT GCAATGGTTG CAGCGCCTGA TGGTGGAATT
GCCTTGGCAC CTGCACCAGC AGCTCCGCCA CCAACTGCTT CTGCACCACC ACCTGCAGCT
CCCTCAGGCG CAAATCCATC AAATACTCCT AGTTCATCTA CCAATACGGA TGCATCGAGT
AATAAGCCGT CAGAAGGTAA ACCAAATGGC ACGAACTCAA AAGGAGAGCG TATTGGAAAA
TATGACGCTC GAAGATTGGC GGAATCAAAA GAAGCCAAAG AGGGTAAGGG TGGATCTGAT
AAACCTGGTT CTAAAAAAGC AGAACCTGGA GTGAATGGGG AAACCCCTCC TAAATATGCT
GGTAAATATG CTAATGGTTT CCGGGCTGCT GAAAAGGCTG CTGGAAAAGA TGGCGCCAAT
AAGTCATTGG CTTCAAATAA GGCTAACCCT CCTAGAGAGG GAAAATACAG CAACCGAGTA
AATGCGCTTA ATAATGGTTC AGCGTCAGCT TCAGCTGCAA TGGCAGCGGC CGCGATGTCA
CAACATCAAT TCTCCTCAAC TGGCTTACCC CCTTTACCAG GGGCTCCTGC TGAGGCAGCC
ACCCCAACAA TATTGCGGGG CGGCGATAGC TTAACCCAGT CTTATGATGA TGTACCATCG
ATACGTAATT CAGGGGTTGC TAATGCGGGA CGTTCACGGA ATACGGAAAA TTACCATGAG
AGTCTTGAGT CGGTTAATTT AATGTCGACA CTGAATTTAT TTATAGTCCA TTAG
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| Protein sequence | MNSIGRQSSF SLSCVTNSLL KRTKSVLTHS LFLIAYAGLS HAAAPVPAPT AKTLPTGGQV
VAGSATISSS STANTAVMNI NQTSQRAVVN WDSFNVGKNA TVNFNQPNSS AVTLNRVTGG
NASVINGAIH ANGQVVLVNE NGVVFGKGAQ VNAAAVTAST LNIADQEFMD GKSTYKDDGI
GVGSNAGKII NKGKIQTNND NGEGGFIALL APEVRNQGYL LAQKGGTVAI GSGSQITLHI
QGQTLVAIKV DESVYNGLIT NKRIIEAPGG LVVLATGAAN QLMAGVIKNT GRIAANSLES
NGGVIELVAK NITQSGQVSA NSQTKEGGQV NLVASEITLT KNSKTTATGA AGGGQVNIGL
ASTQVSGGAQ VNTPTPVAIK ANANQAAQTN QLANTVAVQE SATIDTSATQ TGNGGSIAIW
SKVQTTVAGI LKSMGGAILG NGGFIETSSQ GQVVLAPTAS INTSANNPTG KAGTWLLDPI
DLIINSDAAN VIANALANTN VTIAVTNSTT ACPIGSCTQT NVSGANSSLT IASGADILKL
GTNYTTLTLS SEGIFNLNAN ISGQNLDVII SSSIAYLNVG SSINASKVTV QAQTIYSAGS
IQTSNYLLGA NPGSLGNAIA LLAQAIYVSG RLSANAIGKV AGSITLTANT IKLYPNAVLE
ANGDEGGQIT VAANDSLWSS ATVQANGGNG RGGTLSLTAA NDQYFDQSAL QANGTTDGGA
ITITTQSGDI SFANSLIQTN GSTGRGGSIS LSATNITQIA NSNISANGYS QGGTILIGND
ASNGSLPFSM ATTIDEKTAI NAAQLDPNPT NQHGGFIETS GHTLNLLATI NAGRGGMWLL
DPNDISIEAL PVLGGTPFAY VSGSSYTYTA GASSVVYTAL ITSALATADV IITTASGNIT
VNGAISGVRS LTLLASSGNI QLNAGIQLTG AGSSIVLKAS GYISTAGANT YLTNGGDVIF
WSNTGNVTST TATNANFIYL DSGTKLMTVG GAIYLAGGLP SIGTTSNGNN YPTGYAFTGS
VNSGVLLGSY AGNGIPIIIK SDGGNIVIAG QTTNTNLPGF SSQSSLLIDS GMGTISLTGT
AHNGHGIELG YGSAYSNIVI TSASSSPTAI QINGTTDGGS GYKGFWAIHL AGSATPGVLI
QATGFGGGVS LTGINTPSGI GVYLSDIAIL ANNGPIQINS TALVTQSTSS FLGACSGTAN
PCASFAIGDN TYTPITNSSS NIAINVDARN AGGVSWNGVL TVDTTGGLTI APYTTDGWAT
TPFTWSGSNA LSGGIATFTA DANSFIGVAD KLMIKKITSL TIGASDSTNT VNINQDTGPF
GNLSVHAGNI NINAPIHWVS DEAINLISSG NISVNADLVG PSSGLTAVYG GTYSCSVCSS
YYVLLNPGSS VYGSVPNLTY GIYTSAAGTT LASSAISSLV SGTASWSGVM PDSTSSVGSY
PLSYSSGLSI SSLSYSLIAG NLNNWTITPA PLGIKVTATY TSGSVFTPSN SVIAATGLMA
GQTITSLQAN SSNVGPGNFV TTSGLIGAGG FLASNYAMYA GSEVGNSGVL AGGLYSGTVS
GATNSGGTNT VNINRANLAI TANPSPSGNV YNGNAYNGSY ITNALGSDQG LMTISGVATG
VNAGTYTSNL AVNGAVLSNY NTPVITNANL VISPKPITIT DIASRTIYDG VTNYATLMAN
AGYTLSSALV GSDTIGAINQ TASSVGGTSF SGIAQAGIFF STPSAAVLSI GNANNYLFSY
ATASNTVAKA SLTIAAIPNL TGNVYNGSTY NGTYVTNALG SDQGLMTISG IASGVDAGIY
TSNLAVSGSV LSNYNSPVIR NANLVITPAP LVIKANDLAR VAGTAFYGGN GVTYTGLLNG
ESPSVLSGVL TYSGSAQGAS NAGAYVIQPG GLTSQNYSIG FISGVLVNTP QPVVNAITPP
PPPPPPPMVF SIAPPPPPPA AAAMVSIAPP PPAAEAGSGG REVAPPPVAA AMVAAPDGGI
ALAPAPAAPP PTASAPPPAA PSGANPSNTP SSSTNTDASS NKPSEGKPNG TNSKGERIGK
YDARRLAESK EAKEGKGGSD KPGSKKAEPG VNGETPPKYA GKYANGFRAA EKAAGKDGAN
KSLASNKANP PREGKYSNRV NALNNGSASA SAAMAAAAMS QHQFSSTGLP PLPGAPAEAA
TPTILRGGDS LTQSYDDVPS IRNSGVANAG RSRNTENYHE SLESVNLMST LNLFIVH
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