Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_1076 |
Symbol | |
ID | 5054009 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | - |
Start bp | 1079396 |
End bp | 1081720 |
Gene Length | 2325 bp |
Protein Length | 774 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640471245 |
Product | (p)ppGpp synthetase I, SpoT/RelA |
Protein accession | YP_001155856 |
Protein GI | 145589259 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCAAACCG ATCTGCTGGA TTCTCAGTCA GACACTCCCG TCACCATCAA TAAGTTAAGT GGTAAAAAAT CGATCATTGC CGACTTATTA GCGCAATCGA GTCGCCATTT ATTTGGGCCT ACATCAAGCC CAACTCTCCC TTTAAAGCAT CAAGTCGTTT CGATTGAGGG GCTTTTATCT AAGTTAACTT ACCTCAAGCC TGAAGAAGTT GTTCAGATCA AAAAAGCATT TCAATTTTCA GATGCTGCGC ATTTAGGCCA ATATCGCCAT AGTGGCGAGC CTTACATCAC TCACCCAGTT GCCGTTGCTG AGCTCTGTGC CACATGGCGC CTAGATGCAC CCTCCATCAT GGCTGCCTTA TTACATGATG TGATTGAAGA TACAGGCTGC ACTAAAGCCG ATCTTGTTGA AAAGTTTGGT AACAAGGTTG CTGAACTGGT AGAAGGGCTC ACTAAGCTCG ATAAATTAGA GTTTCAGAGT CATGCTGAGG CGCAAGCAGA AAGCTTTCGC AAAATGTTTA TGGCGATGGC ACGAGATGTA CGGGTGATAT TGGTAAAGCT CGCTGATCGT ACACACAATA TGCGCACCTT AGATGCGGTG CCGATTGAAA AGCGCCGTAG AGTCGCCGCT GAAACCATTG AGATTTACGC ACCCATTGCA CACCGCCTGG GTCTGAATAT TATTTACCGA GATTTGCAAG ACCTTAGCTT CCGCTACTCA ATGCCGATGC GTTTCCGAGT AATTGAGGGT GCGGTTAAGC GGGCGCGGGG TAATCGCAAG GAGATGATTG AAAAGATTTT GCAAGCATCT CGTATGGCAT TTGCAAAAGC GAATCTTGAT GTAGATCTGC GCGGCCGTGA AAAAACGCTG TTTAGTATTT ACAACAAAAT GCGTGCCAAA CATTTGAGTT TTTCTCAAGT GTTGGATGTA TACGCGTTTC GCGTTACGGT AGGCAGTATT GATGAGTGCT ATCGGGCTCT AGGAATTCTG CATTCTCTCT ACAAGCCGAT GCCAGGTAAA TTTAAAGATT ACATTGCCAT TCCCAAGTTG AATGGCTACC AGTCTTTACA CACTACTTTA TTAGGCCCCT CTGGTGTGCC TGTGGAATTT CAGATTCGCA CTACTGATAT GCATGCGATT GCCGAGGCGG GTGTAGCGGC TCACTGGGCC TATAAGGACG GCTCTCCAGA TATGAGCGAG GTTCAAAACC GTGCACATCA ATGGTTGCAA TCCTTAATTG ATATTCAAGA CACCAGTGGA GACTCTCAAG AGTTCTTAGA GCACGTCAAG ATTGATTTAT TTCCAGATGC TGTTTATGTA TTCACCCCAG CAGGCCAGAT TAGAGCTTTG CCACGAGGCG CCACTGCACT TGATTTTGCT TATTCCATTC ACAGTGATTT GGGTAATACC TGTGTGGCCG TAAAAATTAA TGGCTTGCAG TTACCTTTGC GTAGTGAGTT AAAGAACGGC GACATTATTG AAGTGATTAC CTCTGCAAAT TCTCAACCCA ACCCAGGTTG GCTGGCATTT GTGCGAACTG GTAAAGCCCG CGCCTCCATT CGGCACTCAC TAAAAACAAA GCACTACTCA GAGTCGCTCC AATTAGGCGA ACGCTTATTG GCCAATGCTT TGCGCCAACA AGGGGTAGAT GCTGCATTGC TGACCCCAGA AATTTGGGAA AAGCTCATGC ACTGGACGGG TGATAAAACC CGCGAGGAAG CCTGCGTCAA TATCGCCTTG GGTCGTAGAT CTCCTCAAGA GTTGGCTATT CGCCTCAAAA TCTTGGTAGA TGATGAGGAT GGCGGCGAAC AAATGCGTCT TGGCACTGGG GATTGGGTTG CTCCTCAGCA GGAAGGTCAC CACCATCAGC GCCAAGCGAT CTTAGTAGAT GGGCGCGAAG GAAATTCCAT TAGCTTCCAA TCCTGCTGCC ATCCTATTCC AGGTGACAAC ATTATTGGTT ATCTCGGTAA AGGTGAGGGA CTTCAGGTTC ACGCTAATGA TTGCCCTACA GCACTTCGCA TGCTATCGAA AGATAGCGAT AAATGGGTGG AGGTGGAGTG GGGCAAAGAA CTTAATCGAG AATTTGAAGT TGATCTTGCA ATTGATACGC GTCAAGGTAA GGGCGTATTG GCGCGAGTTG CTAGTAGCGT CACATCTGCA GACTCCAACA TCATGAATGT TTCGATGGAA GATCGATTTA AAGAAGATTC TGTGACGATT CGTTTTACGA TTCAGGTCTA TGACCGTCTA CATCTCTCTA AAGTGATGCG GAGCTTACGC ACCAATCCAG ATGTGATGCG TGTGACGCGA ACTAGGGCCG GTTAA
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Protein sequence | MQTDLLDSQS DTPVTINKLS GKKSIIADLL AQSSRHLFGP TSSPTLPLKH QVVSIEGLLS KLTYLKPEEV VQIKKAFQFS DAAHLGQYRH SGEPYITHPV AVAELCATWR LDAPSIMAAL LHDVIEDTGC TKADLVEKFG NKVAELVEGL TKLDKLEFQS HAEAQAESFR KMFMAMARDV RVILVKLADR THNMRTLDAV PIEKRRRVAA ETIEIYAPIA HRLGLNIIYR DLQDLSFRYS MPMRFRVIEG AVKRARGNRK EMIEKILQAS RMAFAKANLD VDLRGREKTL FSIYNKMRAK HLSFSQVLDV YAFRVTVGSI DECYRALGIL HSLYKPMPGK FKDYIAIPKL NGYQSLHTTL LGPSGVPVEF QIRTTDMHAI AEAGVAAHWA YKDGSPDMSE VQNRAHQWLQ SLIDIQDTSG DSQEFLEHVK IDLFPDAVYV FTPAGQIRAL PRGATALDFA YSIHSDLGNT CVAVKINGLQ LPLRSELKNG DIIEVITSAN SQPNPGWLAF VRTGKARASI RHSLKTKHYS ESLQLGERLL ANALRQQGVD AALLTPEIWE KLMHWTGDKT REEACVNIAL GRRSPQELAI RLKILVDDED GGEQMRLGTG DWVAPQQEGH HHQRQAILVD GREGNSISFQ SCCHPIPGDN IIGYLGKGEG LQVHANDCPT ALRMLSKDSD KWVEVEWGKE LNREFEVDLA IDTRQGKGVL ARVASSVTSA DSNIMNVSME DRFKEDSVTI RFTIQVYDRL HLSKVMRSLR TNPDVMRVTR TRAG
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