Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_1028 |
Symbol | |
ID | 5053834 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | - |
Start bp | 1030978 |
End bp | 1032111 |
Gene Length | 1134 bp |
Protein Length | 377 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640471195 |
Product | tartrate dehydrogenase |
Protein accession | YP_001155808 |
Protein GI | 145589211 |
COG category | [C] Energy production and conversion [E] Amino acid transport and metabolism |
COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
TIGRFAM ID | [TIGR02089] tartrate dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.20432 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGCATCA TTATTCAAAT TAAAAAATAC GGAGACCAGT TAATGAATGC AAAAAAAATC TTTAAAAATC CGAAAATAGC GGTTATCGCT GGTGATGGTA TCGGCAAGGA AGTGATGCCT GAGGGCGTTC GCGCTCTTGA GGCGGCTAAT CGCAAGTTTA ATATTGGCAT GCAATTTGAC CACTTTGATT TTGCAAGTTG TGATTACTAT CTCAAGCACG GCAAGATGAT GCCGGATGAT TGGTTCGATA CCCTAATGAA ATACGACGCC ATCTTCTTTG GCGCCGTTGG CATGCCAGAC ATTCTTCCTG ACCACGTGTC TTTGTGGGGA AGCTTAATTC AATTCCGCCG TGGTTTTGAT CAGTATGTGA ATTTACGTCC TGTTCGCCTT TTGCCTGGTG TTCCTTGTCC ATTGGCGAAT CGCAAGCCTG GCGATATTGA TTTCTTCGTG GTTCGTGAAA ATACTGAAGG TGAGTATTCC AGTGTTGGTG GAAAAATGTT CCCCGATACT GATCGTGAAT TTGTCATACA AGAATCCATC TTTACAAGAC AGGGCGTTGA TCGCATCCTG AAATACGCTT TCGACCTTGC TCAAAGCAGA CCCAAGAAAC ATTTGACTTC AGCGACCAAG TCTAATGGTA TTGCAATCAC CATGCCTTAT TGGGATGAGC GTGTAGAAGC CATGTCAAAG AATTTTGCCG ATGTGCGTAC TGATAAATAC CACATTGATA TCCTGGCTGC GCACTTTGTA ATGAATCCAG ACCGTTTCGA CGTGGTAGTT GCCAGCAATC TTTTTGGCGA CATCCTGTCT GACTTAGGAC CAGCATGTAC CGGAACAATC GCGGTTGCAC CATCGGGAAG TATTAATCCT GAAGGGAAGT TCCCGTCACT CTTCGAGCCG GTTCATGGTT CAGCCCCAGA TATTTACGGA AAAATGATTG CCAATCCAAT CGGTCAAATC TGGAGTGGAG CAATGATGCT GGATCACCTA GGCTATCCAG AGGCTGGTCA AGCTATTTTC TCGGCAATTG AAAAAGTACT CGCATCTGGA GCAGGTCATG CACCTTTAAC TCCTGACTTG GGTGGTACAG CAAAGACTGA CGACCTAGGT AAAGCTATCG CCGCAGCCAT CTAA
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Protein sequence | MGIIIQIKKY GDQLMNAKKI FKNPKIAVIA GDGIGKEVMP EGVRALEAAN RKFNIGMQFD HFDFASCDYY LKHGKMMPDD WFDTLMKYDA IFFGAVGMPD ILPDHVSLWG SLIQFRRGFD QYVNLRPVRL LPGVPCPLAN RKPGDIDFFV VRENTEGEYS SVGGKMFPDT DREFVIQESI FTRQGVDRIL KYAFDLAQSR PKKHLTSATK SNGIAITMPY WDERVEAMSK NFADVRTDKY HIDILAAHFV MNPDRFDVVV ASNLFGDILS DLGPACTGTI AVAPSGSINP EGKFPSLFEP VHGSAPDIYG KMIANPIGQI WSGAMMLDHL GYPEAGQAIF SAIEKVLASG AGHAPLTPDL GGTAKTDDLG KAIAAAI
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