| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1025 |
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| Symbol | |
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| ID | 5053704 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | + |
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| Start bp | 1025846 |
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| End bp | 1027159 |
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| Gene Length | 1314 bp |
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| Protein Length | 437 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640471192 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001155805 |
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| Protein GI | 145589208 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0127798 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCAAAAA TAGAAGCTTC TCTCGATAAA GCGGTAACCA AGTTGGTGCA GCTAAAAGAT
GTTGCCAAAG TTCGCTTGTG TGCGCTGTGG CAACAATATT CGCCCCGCTT AAATCAACTC
AAACAAATAG ACTACGCCAC TGCAAAAGCA TTTGTAGTGC AATTTAAATG GCGCATTTTG
CTTGTACTAA TAGTTATTTA TGCGGGCTCA AAAACTTATG ACTACCTTTT CCCCGCATCT
GATAAAGCAG GCGGCCCAGT CACGGTGACA TCCGTCGTAG TAGAAAAGCA AGATGTTCCC
CTCATTATCG AAGCTGCAGG AACCATCGTT TCTAACAACA TTGTGGATAT CCGCCCAATG
GTAACGAATA CGGTTGCGAA GATCGAAGTA AAAGATGGCC AAGAAGTCAA AGCCGGAGAC
TTGCTGTTTA CGCTCGATGA TCGCAACGAT AAAGCCAATT ACGAGAAATT AAAGGCTTTG
GCTGATGACG CCCAAAAACA ATACCTAAGA GCAAAAGAGT TGGTGGCTAA AAACTTCATC
TCTAAAGCAG GTCTTGAGAC GACCTTAGCT AATGCCAAGT CAGCTCAAGC AGCAGCCCGC
TCGGCAGAAG TGCAACTTTC ATTTGATTAC ATTCGCTCGC CTATTGATGG TCGGGCTGGT
ATCGTCAATG TGTTTCCGGG TTCACTGGTT CAAGCAAGTA ACGTTGTGTC AACTTCAACT
AATTCAACTG CTACCTCAAG CGTTGGATCA ATGGTAACGA TTACGCAATT AAATCCTATT
AATGTTCAGT TCGTTATTCC AGAAAAAGAC ATCCCCGTCA TTTTAGAAAA CCAGCTTGAT
GGCGAGGCGA TGAATGTAAA AGTTACCGTT GGAGATAGTG GTAAAAAAAC CTACGAGGGA
AAAGTCATTG TTGTTGACAA CCAAGTTGAT CCATCTATTG CGGCTGTCCG TGTAAAAGCA
CAAATTCCGA ATGATGCAAT GACGCTACTT CCAGGTCAAT TTGCACGAGT ATCTTTGGTG
GCGAATACGC TCAAAGACGC CCTATCAATA CCATCTCAAG CGGTGGTAAT TAATCCCCGC
GGAAAATTAG TCTACGTTAT TGATAAAGAT GGTAAAGCCG TTTCTAAGCC AGTTAATGTG
GTTTATGAAT ACCAAGGCTC ATCAGTAGTA ACTGGTATTG AGGCTGGCGA TAGAGTTGTA
GTCGAAGGCA AGCAAAACTT GCGTCCAGGA AGCAAGATCC GTGAAGCGAA GGCGGCACCA
CCCGACCCTA ATGTTCCCGC ACCAATAACC CCTTCTAGTC CCGATAAGAA ATGA
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| Protein sequence | MSKIEASLDK AVTKLVQLKD VAKVRLCALW QQYSPRLNQL KQIDYATAKA FVVQFKWRIL
LVLIVIYAGS KTYDYLFPAS DKAGGPVTVT SVVVEKQDVP LIIEAAGTIV SNNIVDIRPM
VTNTVAKIEV KDGQEVKAGD LLFTLDDRND KANYEKLKAL ADDAQKQYLR AKELVAKNFI
SKAGLETTLA NAKSAQAAAR SAEVQLSFDY IRSPIDGRAG IVNVFPGSLV QASNVVSTST
NSTATSSVGS MVTITQLNPI NVQFVIPEKD IPVILENQLD GEAMNVKVTV GDSGKKTYEG
KVIVVDNQVD PSIAAVRVKA QIPNDAMTLL PGQFARVSLV ANTLKDALSI PSQAVVINPR
GKLVYVIDKD GKAVSKPVNV VYEYQGSSVV TGIEAGDRVV VEGKQNLRPG SKIREAKAAP
PDPNVPAPIT PSSPDKK
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