| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0692 |
|---|
| Symbol | |
|---|
| ID | 5053662 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | + |
|---|
| Start bp | 691595 |
|---|
| End bp | 692905 |
|---|
| Gene Length | 1311 bp |
|---|
| Protein Length | 436 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640470847 |
|---|
| Product | seryl-tRNA synthetase |
|---|
| Protein accession | YP_001155474 |
|---|
| Protein GI | 145588877 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0172] Seryl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00414] seryl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.96441 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTGATC CACAATTACT TCGCAAAGAT ATCGCTGCAG TGCAGGCGCG CTTAGCCACC
CGTAAATTTC AGCTGGATGT TGAGAAATTC AACACTCTAG AGTCTGAGCG CAAATCTTTA
CAAACCCGCA CTGAAGAGTT ACAAGCCAAA CGCAATCAAT TGGCTAAAGC AATTGGTATG
AAAAAAGGTA AGGGTGAAGA TGCGGCTGCT GAAATGGCTG AAGCTAGTCA AATCAACGTG
GATATGGAAT CAGGCGCTGC AAGATTAAGC GTGCTTCAAG CAGAGATTGC TGATTTCTTG
ATGGGCATTC CCAATCTTCC CGATGAATCT GTTCCAGCCG GTAAAGATGA AACTGAGAAC
AAGGAAGTCA AAGTGTGGGG TGAGCAACCC ATGTTTGATT TCGAGATTAA AGATCACGTA
GATCTCGGTG GTCCATTGGG TCTCGATTTT GAAGTGGCTG CAAAGATTAG TGGCTCACGC
TTTGTCGTGC TCAAGGGACC TATCGCTCGA TTGCATCGCG CATTAGCGCA ATTCATGATC
GATACGCATG CAACTCACCA TGGCTATCAA GAAGTCTATG CGCCTTATAT GGTCAATGCT
GCTTCTATGC GTGGAACTGG TCAATTGCCA AAGTTCGAAG AAGACCTCTT TAAAGTCCCG
CGTCAAATGG GTGGTGAAGA TGAGGGCGGC GAAGCCAAAA CTGAAAACTT CTACCTTATT
CCAACTGCAG AAGTGCCTGT CACAAACTTA GTCAGAGATG AAATCGTGAA TGCCGATACT
CTTCCGCTGA AGTTTGTTGC TCATACCCCA TGCTTCCGCT CTGAAGCTGG CAGCTATGGT
CGTGATGTAC GCGGCATGAT TCGTCAACAT CAATTCGACA AAGTCGAGTT AGTGCAAATC
ACTAAACCAG AACACTCGAT GCAAGCTCTC GAAGAATTGA CGGGCCATGC AGAGCGTATA
TTGGAATTAC TCGAGCTACC TTACAGAAAA GTATTGCTCT GTACTGGAGA CATGGGTTTT
GGTAGCACCA AGACCTATGA CTTAGAGGTA TGGGTGCCCT CTCAAAATGC GTATCGTGAG
ATTAGCTCTT GCTCAAGCAT GGGTGATTTC CAGGCACGCC GTATGCAAGC TAGATTTAAA
GCGGGCCAAG GTAAGCCGGA ATTGCTTCAT ACCTTAAATG GTTCTGGCTT AGCTGTGGGT
AGGGCGCTTG TTGCTCTGAT TGAGAACAAA CAACTAGTAG ACGGCAGTAT TGCTATTCCG
AAAGCGCTAC AGCCTTACTT GGGTGGCTTA GAGACGTTAA AGCCGAATTA A
|
|---|
| Protein sequence | MIDPQLLRKD IAAVQARLAT RKFQLDVEKF NTLESERKSL QTRTEELQAK RNQLAKAIGM
KKGKGEDAAA EMAEASQINV DMESGAARLS VLQAEIADFL MGIPNLPDES VPAGKDETEN
KEVKVWGEQP MFDFEIKDHV DLGGPLGLDF EVAAKISGSR FVVLKGPIAR LHRALAQFMI
DTHATHHGYQ EVYAPYMVNA ASMRGTGQLP KFEEDLFKVP RQMGGEDEGG EAKTENFYLI
PTAEVPVTNL VRDEIVNADT LPLKFVAHTP CFRSEAGSYG RDVRGMIRQH QFDKVELVQI
TKPEHSMQAL EELTGHAERI LELLELPYRK VLLCTGDMGF GSTKTYDLEV WVPSQNAYRE
ISSCSSMGDF QARRMQARFK AGQGKPELLH TLNGSGLAVG RALVALIENK QLVDGSIAIP
KALQPYLGGL ETLKPN
|
|---|
| |