| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0553 |
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| Symbol | |
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| ID | 5053946 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | + |
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| Start bp | 544093 |
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| End bp | 545823 |
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| Gene Length | 1731 bp |
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| Protein Length | 576 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640470707 |
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| Product | thiamine pyrophosphate binding domain-containing protein |
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| Protein accession | YP_001155337 |
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| Protein GI | 145588740 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAAAA CTGCGGCTGA AGTCATTGTT GAAGTATTTG AGTCTGCTGG AGTAAAGCAT
TTTTATGGTG TGATTGGCGA TACGCTAAAC TATGTCAGCG ATGCTATTTC TAAAAGCAGT
ATTGAATGGA TACACGTTCG CCATGAAGAG GTCGGTGCCT TTGCGGCGGG AGCTGACTCT
TATCTCACTG GCACTTTAGC CGGTTGTGCA GGCTCTTGTG GTCCTGGCAG CTTGCATTTA
ATTAATGGTG TGTATGAAGC TCACCGAAGT CGCATTCCAT TGCTGGTGAT TGCGAGCCAA
ATAGATACGA TGTCTCTCGG TACAGATATG CCACAAGAGA TTGATTTTCT TAAAGTGTAC
TCAGACTGCT CCGTATTTTG TGAGCAGTTA TATAACGCAG AGCAGGCTCG CCATTTAGCG
GTGAGAGCTG TTCAGGCGGC GATTAGTAGA CAAGGTCCAG CAGTCATTGT TCTGCCGGTG
GATTTGAGTA AAGCGCTTGT GAAGGACGAG ATTGCTTATT CCGTGCATAT TCCTAATCCA
ATTCGTCGAC CGAATGATGC TGAATTGAAG GAAGCTGCCA AGATTATTTC TGAAGGTAAA
AAAATCGGTA TCTATGCTGG GGCAGGTTGT AACGGTGCAC ACGATCTATT GATTGAGGTT
GCCAAGAAAC TGAAGGCGCC AATTGCACAT ACTTCACGTG CCAAAGATTT TGTTGAATAC
GCCAATCCAT ACAACGTTGG AATGACGGGT TTACTCGGAG TGCATTCAGG CTTTCATATG
ATGAATGAGT GCGATACACT TCTTTTGCTG GGAGCCGATT TTGCCTGGGG CCAGTTTTAT
CCAAAGCACG CCAAGATAGT TCAGATCGAT CGTGATGGTT CGCGTGTAGG AAAGCGTCAT
CCAGTTACCT TGGGATTAGA GGGTGATGTC ATTCCTTCCT TAGAGGCGCT TTTACCGCTG
CTTACTGAGC ATTCGAATGA TGACTTCTTG AAAGAGTGTC TTGAGGAGCG CAAAAAGACA
GAGGCTTCAT TGGCGGGGGA AGAGTCCCCT GGAGATGGCT GCGTTATTCA CCCTCAATAT
CTCACTCATC TGATTAATCA ATATGCGGAC GAAGATGCCA TCCTGACCGG TGATGTAGGG
TCTGCAATGG TATGGGTACT GCGTCACTTT GATACCAATG GAAAACGTAG AAGCCTGATC
AGCTTACGTA ATGGCTCTAT GGCCAATGCG ATGCCTATGG CACTGGGGGC AAAAAAAGCG
TTCCCAAATC GCCAAGTTAT TAGTTTGTCA GGTGATGGTG GCTTAGCAAT GTTGATGGGT
GATCTGCTCA CCATCGATCA AGAAAATCTA CCTATTAAAA TCGTGGTGCT TAATAACAGC
TCGCTCAACT TTGTTGAGTT AGAAATGAAG ACTGAGGGAT TGCTCAATAG CTTTACAGAT
CTGAAGAACC CGAATTTTTC TAAGATAGCA GAGGCTGTTG GTATCAAAGG GTTTGAGGCG
ACTAAAACAG CTGATCTAGA GCAGACTGTA AAAGAGTTCT TAGCATATCC AGGCGCCGCC
TTACTCGATG TTCATACGAA TCGCTACGAA TTAATTATGC CTCCTGACAT TACGGAGAAA
AATGTAGCCG GAATGGTGAC TTACGGAATG AAGGCCTTAA TTAGCGGAAG AATAAAAGAT
GTGGAAGGGC TTATGGTTGA CCCTGTTCAT ACATTGAAAA AGTTGGTCTA A
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| Protein sequence | MAKTAAEVIV EVFESAGVKH FYGVIGDTLN YVSDAISKSS IEWIHVRHEE VGAFAAGADS
YLTGTLAGCA GSCGPGSLHL INGVYEAHRS RIPLLVIASQ IDTMSLGTDM PQEIDFLKVY
SDCSVFCEQL YNAEQARHLA VRAVQAAISR QGPAVIVLPV DLSKALVKDE IAYSVHIPNP
IRRPNDAELK EAAKIISEGK KIGIYAGAGC NGAHDLLIEV AKKLKAPIAH TSRAKDFVEY
ANPYNVGMTG LLGVHSGFHM MNECDTLLLL GADFAWGQFY PKHAKIVQID RDGSRVGKRH
PVTLGLEGDV IPSLEALLPL LTEHSNDDFL KECLEERKKT EASLAGEESP GDGCVIHPQY
LTHLINQYAD EDAILTGDVG SAMVWVLRHF DTNGKRRSLI SLRNGSMANA MPMALGAKKA
FPNRQVISLS GDGGLAMLMG DLLTIDQENL PIKIVVLNNS SLNFVELEMK TEGLLNSFTD
LKNPNFSKIA EAVGIKGFEA TKTADLEQTV KEFLAYPGAA LLDVHTNRYE LIMPPDITEK
NVAGMVTYGM KALISGRIKD VEGLMVDPVH TLKKLV
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