Gene Pnuc_0525 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0525 
Symbol 
ID5052571 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand+ 
Start bp515948 
End bp516535 
Gene Length588 bp 
Protein Length195 aa 
Translation table11 
GC content45% 
IMG OID640470679 
Productoligoribonuclease 
Protein accessionYP_001155309 
Protein GI145588712 
COG category[A] RNA processing and modification 
COG ID[COG1949] Oligoribonuclease (3'->5' exoribonuclease) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.214811 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGAAC AAATCAATAC GGCAACAGCC AAAACAGCCT CACCGAGTGA GCATTTAATC 
TGGGTGGATA TGGAGATGTC AGGCCTGAAC CCTGAAACTG AGCGAATTTT AGAAATCGCC 
ATTATTGTGA CGGATGCCCA CCTGAATACG ATTGCCACGG CCCCTGTCTG GGTGGTTCAC 
CAAGACGATG CAATCTTGGA TGCGATGGAT GCCTGGAATA AGGGTACCCA TGGCCGCTCT 
GGCTTGATTG ATAAGGTTAA GACTTCGACG TTAGACGAGG CTGCGGTGGA GGCTGAATGC 
ATTGCCTTTT TAAAGCAATA TATCAAGGCC GGTATTGCCC CTATGTGCGG TAATACGATA 
GGTCAGGACC GCCGCTTTAT GGCCAAGTAC ATGCCAAAAC TAGAGGCTTA TTTTCATTAT 
CGAAATGTGG ATGTGTCAAC TTTGAAAGAG CTTTGTAAAC GCTGGCATCC AGAGTTAGTA 
AAAGGCTTTA CAAAAAATCA AGCACACACA GCTTTGGCTG ATATTGAAGA ATCTATTGAA 
GAGCTCAAAT ACTATCGAGA GAAGTTTATT GTTCCGTTGC CACAATAA
 
Protein sequence
MSEQINTATA KTASPSEHLI WVDMEMSGLN PETERILEIA IIVTDAHLNT IATAPVWVVH 
QDDAILDAMD AWNKGTHGRS GLIDKVKTST LDEAAVEAEC IAFLKQYIKA GIAPMCGNTI 
GQDRRFMAKY MPKLEAYFHY RNVDVSTLKE LCKRWHPELV KGFTKNQAHT ALADIEESIE 
ELKYYREKFI VPLPQ