Gene Pnuc_0510 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0510 
Symbol 
ID5053050 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand+ 
Start bp502286 
End bp503206 
Gene Length921 bp 
Protein Length306 aa 
Translation table11 
GC content47% 
IMG OID640470664 
Producthistone deacetylase superfamily protein 
Protein accessionYP_001155294 
Protein GI145588697 
COG category[B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAACAG GATACATAAC TCATCCAGAC TTTCTCAAAC ATGAGATGGG TAGCCACCAT 
CCAGAGTGTC CAGAACGAAT TCAGGCTATT AATGACCAAT TGATCCGCAG CGGTATCGAT 
GTATTTTTAC ATCACTTAGA TGCCCCTTTG GCTAGCGAGG AGCAGCTTGA GCTAGTACAT 
AGCCCAGATC ATATTGCCTT TGTTAAAGAG CAGGCGCCGG AATCTGGATA TGCCATGCTC 
GATGGAGACA CCATCATGAA CCCATTTACC TGGACCGCTG CCTTACGTGC ATCGGGTGCC 
GCCATCGCAG GGGTAGATGC GGTGATGAAG GGTGAAGTAG AGAATGTGTT TTGCGCAATA 
CGGCCACCAG GTCACCATGC AGAGCCAACT CGTTCAATGG GTTTTTGTCT TTTTGATAAT 
GTTGCTATTG CTGCGCGTTA TGCCATGGAG GCTTATGGCA TTGATCGGGT GGCCATCATT 
GATTTTGATG TTCACCATGG AAATGGTACG GAAGCTGCTT TTTTCAATGA TCCTAATGTA 
TTGATGTGTA GTTTTTTCCA ACATCCTTTT TATCCCTATA GCGGACTAGA TCACGCCAAT 
AATATGGTGA ACGTACCATT GCCAGCAGCG ACTCGTGGTG ATGTGGTGCG TTCTATTGTG 
GATGAGCGCT GGATGCCAGC TTTAAGAAAT TTTGAACCTC AGCTCATTAT CATTTCAGCA 
GGCTTTGATG CACATCGCGA AGATGATTTG GGTCAAATGG GTCTGGTTGA AGAAGACTAT 
GCGTGGATCA CTCGGCGTTT AAAAGAAATC GCTAATGAAT ACGCTCAAGG CCGTATTGTG 
AGTTGCCTTG AGGGCGGATA CAACTTGTCA GCTCTTGGGC GCAGTGTCGT AGCCCACGTA 
AAGGCTTTGG CTGATATCTA A
 
Protein sequence
MTTGYITHPD FLKHEMGSHH PECPERIQAI NDQLIRSGID VFLHHLDAPL ASEEQLELVH 
SPDHIAFVKE QAPESGYAML DGDTIMNPFT WTAALRASGA AIAGVDAVMK GEVENVFCAI 
RPPGHHAEPT RSMGFCLFDN VAIAARYAME AYGIDRVAII DFDVHHGNGT EAAFFNDPNV 
LMCSFFQHPF YPYSGLDHAN NMVNVPLPAA TRGDVVRSIV DERWMPALRN FEPQLIIISA 
GFDAHREDDL GQMGLVEEDY AWITRRLKEI ANEYAQGRIV SCLEGGYNLS ALGRSVVAHV 
KALADI