| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0489 |
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| Symbol | |
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| ID | 5053241 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | + |
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| Start bp | 478310 |
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| End bp | 480166 |
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| Gene Length | 1857 bp |
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| Protein Length | 618 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640470642 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001155273 |
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| Protein GI | 145588676 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0261011 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCCAAG AAGTCTTCCA GGCCCTGCAA AACAACCAAT TTCTTGAGGC GGAATCCCTG
CTTCAAGAAA TGCTTCTGGC TAGCCCTGAG AATCCAGATG TTTTGCATTT GCTGGGGATA
GTCTGCGGAA TGCAGAATCG CCCAGACGAT GCCTTGAGAT TTTTTGAACA AGCTTTACAA
CTCACCCCCG ATAATTCTGC GCTCCATTTC AATACTGCTA AGGCTTTATC TACCTTACAA
AGGGATATGG ATGCTCTTGA GCACCATCGG AAGGCTCTTG CTATAGACCC CGACAATCCA
GAGATCTGGC TCAATTACGG AAGAAGTTTA GATAATCTTC GTAAGCGTGA AGAAGCTTTA
ACTTGTTATG AAAAAGCAGT TGTTCTGCAA CCCCAAATGG CTGAGGGATG GTTTAACAAA
GGAAAAATAC TGGGTGAATT AAGACGCTAT GCAGAGGCTT TGCAGTCCTA TATCAACGCT
TATCAGTTAA GACCCACCGA ACCTTTTCTT TTGGGGATCA TCTTGCACTA CAAAATGCTC
ATTTGTGATT GGGCGGATTT GGATGGCATC TATCTAAAGA TTCAACAGGA TTTGCATGCC
CACCAGCTGG TGGTAGAGCC CTTTGGATTT CAGGGGATCT CCACTTCCGA GCAAGACCTT
TTGGAGTCAG CCAAGATATT TGCCAAGCAA CGCTTTCCTG CAAGAAAGAA GGCGGTGATT
CAATCTGCCC CTAAATCGAA GAATGAAAAA ATTCGTATTG CCTATCTTTG TGGGGAGTTT
AGAGATCAGG CGACATCCGT ATTAATGACG GGGGTGTATG AGTCTCATGA CCCTGAGTAT
TTTGAAATCT ATGCTTTAGA TAATGGCTGG GATGATGGTG GTGTTTTACG GCCGCGCATG
AAAAAAGCAT TCAAAGAAAT AATCGATATC AGTCAAATGA CGGATCCTGC GGTTGTGAGT
TTGATTGAGG ACTTACAGAT CGATATTTTG GTGAACTTAA ATGGTTACTT TGGCGAAGGG
CGCCAAAATA TCTTTGCATC GCATCCAGCA CCTATTCAGG TAAATTATTT GGGGTTCCCA
GGCACTTTAG GTGCTGAGTA TATGGACTAC TTGATAGCTG ATCCGATTGT GATTCCAGCT
GATAGCCGTC AGTATTACGT AGAAAAAATT GCCTATATGC CCAATAGCTA TCAGGCTAAT
GATTCAAAAC GTGTCATCTC CGCACGAGAA TTTACACGAG CAGAATTGGG TCTGCCGGAG
TCGGGCTTTG TATATTGTTG CTTTAACAAT AATTACAAGA TTACGCCTGA AACATTTGAT
AGTTGGATGA GGATCCTCAA GGCGGTTGAA GGAAGTGTTC TTTGGTTGAT ACAAGATAAC
GTGCCGGCCG AAGAAAATCT GAAGGCTGAG GCTCTGAAGC GTGGAATTTC TTCTGACCGC
ATTATTTTTG CGCAGAGATT ACCCCTTCCA GAGCATCTTG CGCGTCACAA AATAGCAGAC
CTTTTTTTGG ATACGCTTCC TTATAACGCC CACACCACAG CTAGTGATGC TCTGTGGGCT
GGAGTTCCGG TTCTCACGCT TTTGGGAAAT ACATTTCCAG GCAGGGTGGC GGCAAGTCTT
CTGAATGCCG TGGGATTGGC AGAGTTGGTA ACGCATACTC CCCAAGCATA TGAACAACGT
GCAATTGAAT TGGCTCGTGA CCCCTTAGCG TTGAGGGCAA TTCAAGATCG CCTAGTTGAA
AACCGATTAA CAAAACCCCT TTTTGATACC GTGCTATTTA CTCAGGATTT AGAGGTGCTC
TACAAAAAAA TGGTTGAACG GTATAGGGCG AATTTAGCGC CTGAAAATAT TTCTTAG
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| Protein sequence | MFQEVFQALQ NNQFLEAESL LQEMLLASPE NPDVLHLLGI VCGMQNRPDD ALRFFEQALQ
LTPDNSALHF NTAKALSTLQ RDMDALEHHR KALAIDPDNP EIWLNYGRSL DNLRKREEAL
TCYEKAVVLQ PQMAEGWFNK GKILGELRRY AEALQSYINA YQLRPTEPFL LGIILHYKML
ICDWADLDGI YLKIQQDLHA HQLVVEPFGF QGISTSEQDL LESAKIFAKQ RFPARKKAVI
QSAPKSKNEK IRIAYLCGEF RDQATSVLMT GVYESHDPEY FEIYALDNGW DDGGVLRPRM
KKAFKEIIDI SQMTDPAVVS LIEDLQIDIL VNLNGYFGEG RQNIFASHPA PIQVNYLGFP
GTLGAEYMDY LIADPIVIPA DSRQYYVEKI AYMPNSYQAN DSKRVISARE FTRAELGLPE
SGFVYCCFNN NYKITPETFD SWMRILKAVE GSVLWLIQDN VPAEENLKAE ALKRGISSDR
IIFAQRLPLP EHLARHKIAD LFLDTLPYNA HTTASDALWA GVPVLTLLGN TFPGRVAASL
LNAVGLAELV THTPQAYEQR AIELARDPLA LRAIQDRLVE NRLTKPLFDT VLFTQDLEVL
YKKMVERYRA NLAPENIS
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