| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0319 |
|---|
| Symbol | |
|---|
| ID | 5053537 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | + |
|---|
| Start bp | 311198 |
|---|
| End bp | 312565 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640470471 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001155104 |
|---|
| Protein GI | 145588507 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1134] ABC-type polysaccharide/polyol phosphate transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.746089 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTCTA ATGAAATAGT AATTCAGGTA ACTGATTTAA GTAAACGATA CGAAATTTAT
GATCGCGCAG GCGACAGATT AAAGCAATTT ATTTTTCCAA AGCTAGCTAA GTTATTGGGA
AGCTCGAAAA ATAATTACTA TAGAGATTTT TGGGCACTAC AAGATCTATC GATTGCAGTT
CAAAAAGGTG AAACTGTTGG AATTATTGGC AGAAATGGAT CGGGGAAGTC TACTCTTCTT
CAAATTATTT GTGGAACCTT AAGTCCCACT CATGGTGTAG TAAAGGTAAA TGGAAGGGTT
GCTGCTCTAT TGGAGCTAGG ATCTGGTTTT AATCTTGAAT TTACGGGCAG AGAGAATGTT
TATTTAAATG CGGCTGTACT TGGTTTGACG GCAGAGCAGA TAGCCAAGCG TTTTAGCGCA
ATCGAGGAAT TTGCTGATAT TGGAGAATTT ATTGACCAGC CAGTTAAAAC ATACTCGAGT
GGAATGATGG TTAGGCTAGC TTTTTCGGTA ATCGTACATG TTGATGCCGA TATTCTAGTA
ATCGACGAAG CTTTAGCTGT TGGGGATGCC TTCTTCTCTC AAAAGTGTAT GCGCTTTTTG
AGAGAATTTA AAAAGTCTGG TTCAATAATT TTTGTAAGCC ATGACATTTC AGCCGTTAAA
AGTTTTTGCG ATAAGGTATT GTGGATTGAA AAAGGTAAGA TGCTTCAATT AGCATCACCA
AAGACAGTAT GCGAATCTTA TTTAGAGGCT TTTTATGAGG CTCAGCAGGG CAGTAGCACA
TCTACAAAAT TGAAATCAAC TACTGCAAAA AATATTTTTT CAAATCCAGT TAAGGATCAG
CGTTTAGATT TTATAAATAC ATCAAATCTC AGAAATGATC TAGAGATCTT TAAATTTGAT
TCTGCAGCGT CTTCCTTTGG AACGGGAGAA GCTAAGATTA CAGATGTAAT CTTGCTAGAT
GCAGGCGGGC ATGCTCTTAG TTGGATTGTT GGGGGCGAGG AAGTTACCCT TAGAATCACT
GCGCAGGCAA TTAATAACAT TAGCATGCCT ATAGTTGGAT TTTCTATAGT TGATAGACTG
GGGCAAAACT TGTTTGGTGA TAATACGTTC TTGACTTATC GAGATCACCC ATTGTGTCTA
GATGCGGGGG AAGTTGTCAC TGCGGAATTT AAATTTAATA TCCCTCTACT GCCGTCTGGG
AGTTATTCTA TAAATACCGC CATTGCCAGC GGTGTTCAGA GCGATCATCG ACAGTTGGAT
TGGGTCCATG ATGCGATTAT TTTTCAGTCT CACTCAAGTA GCGTTTGCAC TGGCCTAATG
GGAATTCCAA TGCTAGACAT AAATATGAAT ATTGTTAAAG GGCGTTAG
|
|---|
| Protein sequence | MSSNEIVIQV TDLSKRYEIY DRAGDRLKQF IFPKLAKLLG SSKNNYYRDF WALQDLSIAV
QKGETVGIIG RNGSGKSTLL QIICGTLSPT HGVVKVNGRV AALLELGSGF NLEFTGRENV
YLNAAVLGLT AEQIAKRFSA IEEFADIGEF IDQPVKTYSS GMMVRLAFSV IVHVDADILV
IDEALAVGDA FFSQKCMRFL REFKKSGSII FVSHDISAVK SFCDKVLWIE KGKMLQLASP
KTVCESYLEA FYEAQQGSST STKLKSTTAK NIFSNPVKDQ RLDFINTSNL RNDLEIFKFD
SAASSFGTGE AKITDVILLD AGGHALSWIV GGEEVTLRIT AQAINNISMP IVGFSIVDRL
GQNLFGDNTF LTYRDHPLCL DAGEVVTAEF KFNIPLLPSG SYSINTAIAS GVQSDHRQLD
WVHDAIIFQS HSSSVCTGLM GIPMLDINMN IVKGR
|
|---|
| |