Gene Pnuc_0253 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0253 
Symbol 
ID5053848 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand+ 
Start bp251688 
End bp252746 
Gene Length1059 bp 
Protein Length352 aa 
Translation table11 
GC content44% 
IMG OID640470405 
ProductdTDP-glucose 4,6-dehydratase 
Protein accessionYP_001155038 
Protein GI145588441 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1088] dTDP-D-glucose 4,6-dehydratase 
TIGRFAM ID[TIGR01181] dTDP-glucose 4,6-dehydratase 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.430028 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTTTAG TAACCGGTGG TGCTGGCTTT ATTGGAGGGA ATTTTGTATT GGATTGGTTG 
GCTAACTCCA ATGCTGAAGG AATAGTCAAT TTAGATAAAT TAACTTATGC CGGCAACCTG 
GCTACCCTCG ATTCACTCAA AGATGATGCT CGCCATGTAT TTATTCATGG TGATATTGGT 
GATAAAGAGC TTGTAACAAA ACTACTAACT CAATATAAAC CCCGAGCCAT CGTAAACTTT 
GCGGCTGAAA GCCACGTGGA TCGCTCTATT CATGGGCCGG CAGAATTTGT GCAAACCAAT 
ATTGTGGGTA CTTTTAATCT GCTCGAGTGC GCTCGCGAAT ATTGGAACTC ATTAGATGGT 
GCTGAAAAAG AGCAATTTCG TTTTCATCAT GTTTCAACCG ATGAGGTTTA TGGCTCACTC 
TCAGCAGCAG ATCCTGCGTT TACTGAGACC AATTCCTATG AGCCTAATAG CCCATACTCT 
GCCTCAAAGG CTGCTTCTGA TCATCTAGTG CGCGCCTGGT TTCATACCTA TAGCTTCCCT 
GTGGTGACCA CCAATTGCTC GAATAACTAC GGACCTTATC ATTTCCCCGA AAAATTAATC 
CCATTGGTCA TTTTGAATGC ACTCAATGGC AAGCCTTTAC CTATTTACGG TGATGGCCAG 
CAAGTGCGAG ATTGGCTGTA TGTTGGTGAT CACTGCTCTG CAATTCGTGA AGTTTTAGCT 
AAGGGCAAGT TGGGAGAGAC CTATAACATT GGCGGCTGGA ATGAAAAAGC CAATATTGAT 
GTGGTGAAAA TAATTTGCCA AATATTAGAC CAGCTAAAAC CAAGGGCTGA TGGTAAATCT 
TATGCTGAGC AAATTACCTT TGTAAAAGAT CGGCCAGGGC ACGATCGTCG CTATGCGATT 
GATGCTAGTA AAGTCGAGCG TGATTTAGGC TGGCGTCCAG CAGAGACCTT TGACACTGGT 
ATCCGTAAAA CGGTGCAGTG GTATCTCGAA AATCCAGCAT GGATCGAAGG CGTAGTGAGT 
GGTTCATACC GTGACTGGTT GCAAAAGCAG TACAACTAA
 
Protein sequence
MILVTGGAGF IGGNFVLDWL ANSNAEGIVN LDKLTYAGNL ATLDSLKDDA RHVFIHGDIG 
DKELVTKLLT QYKPRAIVNF AAESHVDRSI HGPAEFVQTN IVGTFNLLEC AREYWNSLDG 
AEKEQFRFHH VSTDEVYGSL SAADPAFTET NSYEPNSPYS ASKAASDHLV RAWFHTYSFP 
VVTTNCSNNY GPYHFPEKLI PLVILNALNG KPLPIYGDGQ QVRDWLYVGD HCSAIREVLA 
KGKLGETYNI GGWNEKANID VVKIICQILD QLKPRADGKS YAEQITFVKD RPGHDRRYAI 
DASKVERDLG WRPAETFDTG IRKTVQWYLE NPAWIEGVVS GSYRDWLQKQ YN