| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0217 |
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| Symbol | |
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| ID | 5052279 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | + |
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| Start bp | 215943 |
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| End bp | 216848 |
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| Gene Length | 906 bp |
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| Protein Length | 301 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640470369 |
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| Product | shikimate 5-dehydrogenase |
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| Protein accession | YP_001155002 |
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| Protein GI | 145588405 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGTTCAC ATACTTCTAT TGATTTGCAT ACCGATCCAA GCGTTTATTC TGGCTTGGAT
GTCTATGCTG TGGCTGGTAA TCCAATAGCG CATAGCAAGT CACCTGCAAT TCATCAGCGT
TTCGCACAGC AAGCGGGGCA GCAAATGTAT TACGGGCGCT TGCAGCCAGA GTTGAACTCT
TTTGCCCAAA CTGCCAAATC GTTTTTTTCC GCAGGTGGCA AAGGGATGAA TGTCACCGTT
CCATTTAAGT TAGATGCCCA GGCATTGGCT GATCAAGTGA CCGCACGCGC TCAATTGGCC
GGCGCTGTAA ATACTCTTTG GATGGTGGAT GGAAAAATCC ATGGCGATAA CACTGATGGT
GCAGGTTTCG TACGAGATCT GCTGGCTCAA GGCATAGTGA TTGGAAAATC GCGAATATTG
CTTCTTGGTG CTGGCGGTGC AGCGCGTGGA GTGATTGGAC CCTTACTCGA GCAATCACCT
AAAAGTGTTG TGATTGCTAA TCGCTCTAGC GCTAAGGCTG ATGAATTAAT TGGCTTATTT
GCAAACTTAG CTGCTTCTAA AGAGGTTGCG ATCGAGTCGC GTACTTTAGC CGACCTAGAG
GACACTCAAA AAACCCAACA CCCTTTTGAT TTGGTAATTA ATGCCACCGC GGCTGGGTTA
TCGGATCAAT CTCCATTGAG TGCTCAGGCA GTCAGTAATG TATTCATGCC AAGTTCATTT
GCTTATGACA TGGTCTACGG CAAAACAACG GCCTTTATGC AGCAAGCGCT TCAACGAGGT
GCTCGTATTA GTGATGGTTT GGGTATGCTG GTTGAACAGG CTGCCGATGC ATTTTTATTG
TGGCGGGGCA CACAGCTTGC TAGCAAAATT GATCCACGCA GCATTTTGGC CGAATTACGT
CGTTAA
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| Protein sequence | MSSHTSIDLH TDPSVYSGLD VYAVAGNPIA HSKSPAIHQR FAQQAGQQMY YGRLQPELNS
FAQTAKSFFS AGGKGMNVTV PFKLDAQALA DQVTARAQLA GAVNTLWMVD GKIHGDNTDG
AGFVRDLLAQ GIVIGKSRIL LLGAGGAARG VIGPLLEQSP KSVVIANRSS AKADELIGLF
ANLAASKEVA IESRTLADLE DTQKTQHPFD LVINATAAGL SDQSPLSAQA VSNVFMPSSF
AYDMVYGKTT AFMQQALQRG ARISDGLGML VEQAADAFLL WRGTQLASKI DPRSILAELR
R
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