Gene Pnuc_0123 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0123 
Symbol 
ID5053923 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand
Start bp118149 
End bp119321 
Gene Length1173 bp 
Protein Length390 aa 
Translation table11 
GC content43% 
IMG OID640470274 
Productpeptidase S1 and S6, chymotrypsin/Hap 
Protein accessionYP_001154908 
Protein GI145588311 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family
[TIGR02038] periplasmic serine pepetdase DegS 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTTAATC GACTTTGGTT ACTGTTTGCA CAATCGGTAA CCATTCTTTT AGCTGCTTGG 
TTCATTGTGG CAACACTCAA ACCTCAGTGG GTCAGCTCAC CCAATCAAAA TTTATTGGAA
CGTGTGACAC TGAAAGAAGG GCTCTATGAC GGCAGCTCAT TAAGCCCAGG CTCGTATCAC
GAGGCGGTAA AAAAATCGAT GCCCGCAGTG GTGAATATTT TTACCAATAA AAATAGTTCT
AAACCAAAAA CTAAAAAAAG AAATCATTCA TCAGACCCAC TATTTAAATT CTTCTTTGGG
GATGAGCCTC CAGGGGAAGA GCCAAAATCT AGCCTTGGGT CTGGAGTTCT AGTGAGTCCT
GAGGGCGTCA TTCTGACTAA CCATCATGTC ATCAGTGATG CAGATGAAGT TGAAGTCTCG
CTTGCAGATG GTAGAAAATT TTCCGCAAAA CTGATTGGTA GCGATCCAGA AACAGACATC
GCTGTTCTTA AAATTAATGC CCCCTCTTTA CCAACGCCTA TTACTTTTGG AGAGATTGAG
TCGGTTTATG TAGGAGATAT AGTTTTAGCA ATTGGCAATC CTTTTGGCGT AGGGCAAACA
GTCACATCTG GAATAGTGTC CGCCCTTGGA AGAGATCATG TAGGCATTAA TACATTTGAA
AACTTTATTC AAACAGATGC CTCAATTAAT CCTGGAAATT CTGGGGGCGC CTTGGTCGAT
ACTCGCGGCA ATTTAATTGG CATTAACACT GCAATTTATT CAAACAATGG TGGCTCCATG
GGCATTGGCT TTGCTATTCC AGTCAATCTT GCAAAACAAG TGATGGAGTC CATTTTGATA
ACTGGCGGCG TTACTAGGGG ATGGATCGGA GTAGAGCCTC AAAATCTTTC TAAAGAGCTC
TCCGAGTCGC TTGGGCTACC AGCTAATACC GAAGGTGTTC TGTTGTCTGG AATTCTTGAG
GGAGGGCCTG CTGCTCGAGG CGGCGCACAA CCAGGTGATG TTCTCATTAG CGTTAATGAC
AAACCAATTA TGGATGTTCG GCAACTACTG AATCAAATTG CACAAATTGG GCCAGGGAAT
ACAGCTGACC TGAAAGTGTT GCGCAAGAAC AAAACTTTGG ATTTAAAAGT GCAAACTGGA
AAACGTCCCA AACCTACTGC GGTTAATCAA TGA
 
Protein sequence
MFNRLWLLFA QSVTILLAAW FIVATLKPQW VSSPNQNLLE RVTLKEGLYD GSSLSPGSYH 
EAVKKSMPAV VNIFTNKNSS KPKTKKRNHS SDPLFKFFFG DEPPGEEPKS SLGSGVLVSP
EGVILTNHHV ISDADEVEVS LADGRKFSAK LIGSDPETDI AVLKINAPSL PTPITFGEIE
SVYVGDIVLA IGNPFGVGQT VTSGIVSALG RDHVGINTFE NFIQTDASIN PGNSGGALVD
TRGNLIGINT AIYSNNGGSM GIGFAIPVNL AKQVMESILI TGGVTRGWIG VEPQNLSKEL
SESLGLPANT EGVLLSGILE GGPAARGGAQ PGDVLISVND KPIMDVRQLL NQIAQIGPGN
TADLKVLRKN KTLDLKVQTG KRPKPTAVNQ