| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0122 |
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| Symbol | |
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| ID | 5051975 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 116170 |
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| End bp | 118152 |
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| Gene Length | 1983 bp |
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| Protein Length | 660 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 640470273 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001154907 |
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| Protein GI | 145588310 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.142603 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGAGG CTGTGGCTAC ACAAACCTTA TTTGCAAATG CCCTGACTTT TGCACAATCT
GAGCAATACC AGGCTGCCAT AGATGTGTTG GCAAAACTTC TCAAGGCAGA GCCAAATCAT
GAAGGTGCAC AGCAATTAAT TGGGGCTATC TCAAATGCTT TACCCAACAA AAATCAATCA
ATTACCTTAT TAAAAGAATT TATTGAGATT AGCAGCTCTT CACCAGTACT TTTATATGCA
TTGGGATCAC TACATTTAGA GCTTGGGAAC TACCCCGAGG CAATTTTGCA CCTGAATCAC
GCCTTGGACC TAGACCCAAA TAGTTTTGAG TCACTCCATG ATATCGGCGC TGCCTACGCA
CTCTCTGGCA ATAAGGTAGC AGCCTTAGAA AGTCTTCTCA AGGCCGCAAA AATCAATAGT
CAGTCAGCAG ATCTTTTCTA TAACTTAGGC AGACTATACG ATGACCAGTT TGAATATGGG
GCAGCAATTA CCGCCTATAG AAAATCAGTT GAGATTAACT CTAGTTTTAC GGAAGCATGG
ATTAATTTAG GCATTGATTT AGGTGTCTAT AAAAAATATT CAGAATCTTT GAGGTGCCTA
GACATAGCAT ATGCACAAAA TCCAAATGTG GATTTTTTAT ATGGCGACTG CCTGTATTTA
CATATGCGCA TGTGCTTATG GGAAAAATTA AATCTAGCAA AAGACAATAT TGAAAAGGGG
GTGATGAAAG GTACGAGAAT CATTCCCCCA TTCCCCCTAT CTGCATTAAT TGACTCTCCC
ACCCTGAATT TAGAGGCGGC CAAAATTTAT ACGCAGGCAC GCTATCCAAA AAATTCTTCG
TTAGGACCCA TCAGTAATTC TTCTAATAAA AAAATAAAGG TTGGGTATTT TTCTCCAGAC
TTTCATGAGC ACCCTGTTTC ATATTTGATG GCAGAAGTTT TTGAGCTGCA CGATCGTAGT
CAATTTGAAA TTTATGGCTT TTCATTTGGC AAGCCAAACA ACGACGCCAT GCGACAAAGA
GTGGAGAGCT CTTTTGACCA CTTCCTTGAT GTCGCGCAGA ATACCCCCCA AGAAATAGCA
TCTATGTCGA GAGAAATGGG CATCGATATA GCTATCGATT TATGTGGATT TACTGAAAAT
GCTAGAACCG AAATATTTGC CATGAGAGCA GCGCCTATCC AAGCTAGCTA TATCGGATTT
TTAGGAAGTA TGGGGGCAGA ATATATAGAC TACTTAATTG CGGATGAAGT CATCGTTCCA
CCTCAGTTAA GGCAGTTTTA TAGCGAAAAG ATAATTTATC TTCCAAGTTA TCAAGCAAAT
GATTCGAAGC GAGCGCCAAG TGAAAAATAC TTCGCTAAAT CTGATTTTGG AATCCAAGAG
GATCAATTCG TATTTTGTAA TCTGAATAAT GCCTTCAAGA TCACCCAAGC TATCTTTGAT
AGCTGGTTAA GAATACTAAA GATGACCCCT AATTCAGTCA TGCTTTTGTA TGCTGAAAAT
GCGGAAGCTA CTAAGAATCT ACTGGAGTAT GCAAGCAAAA ATGGGGTTGC CCCTCAAAGG
TTTGTTTTTG CCGAGCGTTT GACTAGGGCA GACTATCTTG CTCGCTACAA AATAACTGAT
TTATTCCTAG ACACTACTCC ATACAATGCT GGCACTACAG CAAGCGATGC CCTATGGATG
GACATACCTG TAATTACTCT GCAGGGTGAA TCCTTTCCAA GTCGAGTGGC CTCTAGCCTA
CTCACACATC TGGATTTACC AGAATTAATT CATCAGTCAA TGGCTGGCTA TGAAACACAA
GCAGTAGAAC TCGCCACCTA TCCAGAAAAG TATATAGACC TAAAAAATAA ATTAATTGCC
AATAAAAATA GTACGCGCCT ATTTAACTCA AACTTGTTTA TGCATAGTTA TGAAAGTGCT
CTCAAAGAAG CAAATACTCT TTTTTGCGCT AACTTACCCC TCAAGGATAT TATTAGCCTT
TAG
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| Protein sequence | MKEAVATQTL FANALTFAQS EQYQAAIDVL AKLLKAEPNH EGAQQLIGAI SNALPNKNQS
ITLLKEFIEI SSSSPVLLYA LGSLHLELGN YPEAILHLNH ALDLDPNSFE SLHDIGAAYA
LSGNKVAALE SLLKAAKINS QSADLFYNLG RLYDDQFEYG AAITAYRKSV EINSSFTEAW
INLGIDLGVY KKYSESLRCL DIAYAQNPNV DFLYGDCLYL HMRMCLWEKL NLAKDNIEKG
VMKGTRIIPP FPLSALIDSP TLNLEAAKIY TQARYPKNSS LGPISNSSNK KIKVGYFSPD
FHEHPVSYLM AEVFELHDRS QFEIYGFSFG KPNNDAMRQR VESSFDHFLD VAQNTPQEIA
SMSREMGIDI AIDLCGFTEN ARTEIFAMRA APIQASYIGF LGSMGAEYID YLIADEVIVP
PQLRQFYSEK IIYLPSYQAN DSKRAPSEKY FAKSDFGIQE DQFVFCNLNN AFKITQAIFD
SWLRILKMTP NSVMLLYAEN AEATKNLLEY ASKNGVAPQR FVFAERLTRA DYLARYKITD
LFLDTTPYNA GTTASDALWM DIPVITLQGE SFPSRVASSL LTHLDLPELI HQSMAGYETQ
AVELATYPEK YIDLKNKLIA NKNSTRLFNS NLFMHSYESA LKEANTLFCA NLPLKDIISL
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