| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0121 |
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| Symbol | |
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| ID | 5053211 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | + |
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| Start bp | 113982 |
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| End bp | 116180 |
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| Gene Length | 2199 bp |
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| Protein Length | 732 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640470272 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001154906 |
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| Protein GI | 145588309 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[R] General function prediction only |
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| COG ID | [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family
[COG4783] Putative Zn-dependent protease, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.261868 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCTCCC CTCAAACTAT TCAGCTTCTT CAAAAAGCCG TGCAAGAAAT TCAGGCTAAT
GAGCTGGAAT CAGCAAAATT ACATCTCAAA GCCGTATTGA GTAAAGAAAG AAGTCAGCCA
GATGCGCTGC GTTTTCTGGG GATAATTGCC GGCCTTCAAA AAGATTGGAC TCAAGCGCTG
GAATTAATTG ATCAGGCAAT TGCAGTTAGT CCAGAAAATG GATTGGCATA CAGCAATCGA
GGCAACGTTT TAAGCGAACT AAAGCGCCAT GAAGAGGCGC TCACTTGTTA TGAAAAGGCG
ATTTCTCTAC AGCCAGATTA TGCCGAGGCC TATAGTAATC AAGGGAATGC TTTGCAAGCT
TTGGGGCGCT TTGAAGAGGC GCTCATTTGT TATGAAAAGG CGATTTCTCT ACAGCCAGAT
TATGCCGAGG CCTATAGTAA TCAAGGGAAT GCATTTTTAG CATTGTCGCG TTATCAGGCG
GCCTTAGCTT GTTATGAAAA GACCGTATTG TTAGACGCCA ATAATGCCAA GGCATTTTAT
GGTGCAGCCA TTATTTTTGA TCTTCAAAAA AAGTATGACT ATTCTTTAGG TTGTTGCAAT
CAGGCATTAA AAATACAGCC TCACTATCTT GAGGCTTTGG CACTCAGAGG CACCATTTAT
TTCCGGGCCA AGGACTACGA ACAGGCGCTT ACCAATTTTG ATGAAATTCT TCTCATTCAC
CCCCAATCCA TTCAGGCTTG GTTGTCAAAG GGTGATATTT ACGCAGAAAC GAAGCAGTTT
GAAAAAGCTG ATGAAGCTTT TAAGAAGGCT TTAGTAATAG ACCCTACAAA AGATTTTCTG
TTTGGGCTTT CTATACAAAA TCAGATACAA ATGTGTCAAT GGACTGACCT GACGAATCAA
GTGAAGGATT TGGTTCATCG AGTTAGAGAT GGTGAAAAAG TCGCAATTCC ATACAATCTC
ATCTCTTTAG TAGATGATAA GAGTTTAATT AGGTGCTCCA TTGAGATTTA CGCACAGGCC
ATGCGGGGTA ATATTGAGAG AGTTAAGCAA GAGAAAATTT CTCCAAAGAA AAAAATACGG
CTTGGTTATT TTTCTGCAGA TTTTCATAAT CACCCTACGG CATATTTAGT TGCCGAACTT
TTTGAGTGCC ATGACAAAGA AAAATTTGAA CTTTTTGGAT TTGTATTTGG CCGTAATGCT
CCAGATGAGA TGCGTAACAG GCTGGAGAAA TCATTTGACC AATTTCTGGA TGTTGAAGAT
AGATCGGATG AAGAGATTGC TCAGCTAGCG CGTGAAATGC ACATCGATAT AGCCATTGAT
TTAAAAGGCT TTACCAAAGA AGCGCGCCCT AAAATATTCA TGTATGGCGC TGCCCCGATT
CAAATTAGCT ATCTAGCATT TCCTGGGACG ATGGGATTGC CGTGTTTTGA TTATGTGATC
GCCGATCCTA TTTTGATTCC GGAAAAGCAT CAAGATGGCA TGGTAGAGAA AATTATTTAT
ATGCCCGATA GCTATCAAGT CAATGATAGA AGCAGGAAGA TATCACCACT GATCAAGTCT
CGTAAAGAGC TTGGGCTTCC TGAGTCGGGA TTTGTGTTTT GCTGTTTTAA TAACAACTAT
AAGATTACTC CAGCAGTTTT AGATGGCTGG GTAAAAATTT TGCTGGCAGT AGAGGGTAGT
GTACTTTGGC TTTATGAAGA CAACCCTATT GCGGTCGCTA ACTTAAAGCA AGAGGCTTTA
ACAAGAGGCT TAGATGCTGG CAGATTTATT TTCGCTGGGC GCATGGATTC AGCAGATCAT
TTAGCTAGAT ATAAGAATGC TAATTTATTC CTAGACACTA CCCCGTGTAA TGCACACACA
ACAGCTAGTG ATGCTTTATG GGCTGGGTTA CCGGTACTCA CGCTAGCTGG AGAGTCTTTT
GGTGCTCGCG TTGCCGCAAG TCTTAATAAT GCCGTTGGAC TTTCTGGTTT AACGGTAGAA
ACACAAGAAG AATATGAAGC GCTAGCAATT CAGTTAGCAA CTAGTCCAAG CAGATTGAAG
GAACTTAAAG ATCGACTTGA GAGAAATCTG TTAACTGCCC CTCTATTTGA TACGCCGCTA
TTTACAAAAA ATCTAGAGGC CGGATACATA GAGGCTTATG AGCGACATCA ACAAAATATG
CCGTTAGATC ATATCTATAT TGACGCCCCT AAAGGCTAA
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| Protein sequence | MSSPQTIQLL QKAVQEIQAN ELESAKLHLK AVLSKERSQP DALRFLGIIA GLQKDWTQAL
ELIDQAIAVS PENGLAYSNR GNVLSELKRH EEALTCYEKA ISLQPDYAEA YSNQGNALQA
LGRFEEALIC YEKAISLQPD YAEAYSNQGN AFLALSRYQA ALACYEKTVL LDANNAKAFY
GAAIIFDLQK KYDYSLGCCN QALKIQPHYL EALALRGTIY FRAKDYEQAL TNFDEILLIH
PQSIQAWLSK GDIYAETKQF EKADEAFKKA LVIDPTKDFL FGLSIQNQIQ MCQWTDLTNQ
VKDLVHRVRD GEKVAIPYNL ISLVDDKSLI RCSIEIYAQA MRGNIERVKQ EKISPKKKIR
LGYFSADFHN HPTAYLVAEL FECHDKEKFE LFGFVFGRNA PDEMRNRLEK SFDQFLDVED
RSDEEIAQLA REMHIDIAID LKGFTKEARP KIFMYGAAPI QISYLAFPGT MGLPCFDYVI
ADPILIPEKH QDGMVEKIIY MPDSYQVNDR SRKISPLIKS RKELGLPESG FVFCCFNNNY
KITPAVLDGW VKILLAVEGS VLWLYEDNPI AVANLKQEAL TRGLDAGRFI FAGRMDSADH
LARYKNANLF LDTTPCNAHT TASDALWAGL PVLTLAGESF GARVAASLNN AVGLSGLTVE
TQEEYEALAI QLATSPSRLK ELKDRLERNL LTAPLFDTPL FTKNLEAGYI EAYERHQQNM
PLDHIYIDAP KG
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