| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0090 |
|---|
| Symbol | |
|---|
| ID | 5053440 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | - |
|---|
| Start bp | 83596 |
|---|
| End bp | 84657 |
|---|
| Gene Length | 1062 bp |
|---|
| Protein Length | 353 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640470242 |
|---|
| Product | type II and III secretion system protein |
|---|
| Protein accession | YP_001154876 |
|---|
| Protein GI | 145588279 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4796] Type II secretory pathway, component HofQ |
|---|
| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.131629 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGGAA TTTCTATTAC TACTTTAGCA AACGACAGCA CCCCCAAACA GGACCACTTT
GATACGATTA TCAGCCTTCA ATTTGTTGAT ATTGAGGTTG CTGAACTCTT GCAGGTTTTG
GCAAAACTTG GTCATACCAA TTTTTTACTT AGCGAATCTA TCAAAGGCAA AATTTCAGTC
GATCTCAATA ACACCCCTTG GCAAACAGCC TTACATTCAA TTCTTGCAAG CCGGGGTTTG
AGGCTTGTCA GAAATGGCGA TATCTATTGG ATAGGTCCTC ATGCTGAAAT TGCGGCATTC
CAAAAATACC GCCGGGAAGA CTCTGCCCTT CCTTTTGGCG GAGACCATAT CAACAGCCCC
AGTCAAATAT TGATCGAGGC TCGTATTGTT GAAGCCGATG AACGCTTTGC CCGAGAATTG
GGTGTCAAAA TTGGTCAGCA GGCAAATTTA GCCGGGAGTA GAACAGACAA AAAAATAAGC
GCTAACTTAG ATTTAGGGGG AGCTGGCTTA AATGGCTTTA ACCCAGCAAC CGTTGCCGCA
ACCCTGCTTT CTAAAGATGC AAGCCGGCTC TTGCAAATGG AGCTCTCAGC GCTAGAGTCC
GAAGGACAAG GCAAGATTCT ATCTAATCCG CGAATCATGA CTGGCGATCA AGTGAAAGCC
ACTATTGAGC AAGGGACGGA ACTTCCCTAC CAAACTACCT CACAAAACGG TAGCAAATTG
CAATTTAGAA AAGCTAATTT GCGCCTGGAG GTTCTCCCCA AAATTCATCC TGATGGAAAA
ATCTCAATGT TGGTTGGTAT TAACAAAGAT ACTATTGGCA TGAAAACTGA GCAGGGTTAT
GCCATTGATA CCAAAAGCCT TAGCTCGGAA GTCACCGTAG AAAACGGTGG AACCGCCATT
ATTGGCGGCA TTTACCAGAC CACTGAAAGA GAGGATGAAG TCAAAATCCC TCTTTTGGGG
GATATCCCCT TATTTGGCCA TTTATTTCGC CATAAATCGA AGTTGAAGGA CAAAACTGAA
CTACTTGTCT TCCTAACTCC CACCGTTCTA GATAAACACT AA
|
|---|
| Protein sequence | MLGISITTLA NDSTPKQDHF DTIISLQFVD IEVAELLQVL AKLGHTNFLL SESIKGKISV
DLNNTPWQTA LHSILASRGL RLVRNGDIYW IGPHAEIAAF QKYRREDSAL PFGGDHINSP
SQILIEARIV EADERFAREL GVKIGQQANL AGSRTDKKIS ANLDLGGAGL NGFNPATVAA
TLLSKDASRL LQMELSALES EGQGKILSNP RIMTGDQVKA TIEQGTELPY QTTSQNGSKL
QFRKANLRLE VLPKIHPDGK ISMLVGINKD TIGMKTEQGY AIDTKSLSSE VTVENGGTAI
IGGIYQTTER EDEVKIPLLG DIPLFGHLFR HKSKLKDKTE LLVFLTPTVL DKH
|
|---|
| |