Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_0068 |
Symbol | rplF |
ID | 5052933 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | + |
Start bp | 68014 |
End bp | 68547 |
Gene Length | 534 bp |
Protein Length | 177 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640470220 |
Product | 50S ribosomal protein L6 |
Protein accession | YP_001154854 |
Protein GI | 145588257 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0097] Ribosomal protein L6P/L9E |
TIGRFAM ID | [TIGR03654] ribosomal protein L6, bacterial type |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.00100116 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCCCGCG TAGGTAAATC ACCAATTACA GTTCCTAAGG GCGCTGAGAT CAGCATCAAC GGTGCTAACG TTACTGTTAA GGGCCCTTTG GGTACTTTGA CACACAATTT GCATCCTTCT GTTGGTTTGA AACAAGAAGA TGGCGTCTTG ACAGTTGTTT TAAATAACGA CTCACCAGAA GCTGGCGCTC AGTCAGGTAC AGCACGTGCT TTGGTAAACA ACATGGTTGT TGGCGTAACT ACTGGCTTTG AGCGCAAGCT CAGCTTGGTA GGCGTTGGTT ACCGTGCTGC TGCTCAAGGT GAAACATTGA AATTGCAGTT AGGTTTCTCG CATGACATTA TTTACAACCT GCCAAAGGGT GTGAAGGCTG AGACTCCAAC TCAAACTGAA ATCATTATCA AAGGTTCCAA CAAGCAGCAA GTTGGCCAGG TTGCAGCTGA AGTTCGCGCA TACCGTTCAC CAGAGCCTTA CAAAGGCAAA GGCGTTCGCT ACGTGGATGA GGTTGTGCAC CTGAAAGAAA CTAAGAAGAA GTAA
|
Protein sequence | MSRVGKSPIT VPKGAEISIN GANVTVKGPL GTLTHNLHPS VGLKQEDGVL TVVLNNDSPE AGAQSGTARA LVNNMVVGVT TGFERKLSLV GVGYRAAAQG ETLKLQLGFS HDIIYNLPKG VKAETPTQTE IIIKGSNKQQ VGQVAAEVRA YRSPEPYKGK GVRYVDEVVH LKETKKK
|
| |