Gene Pnuc_0060 details

Gene Information

• Locus tag: Pnuc_0060
• Symbol: rplP
• ID: 5053801
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1
• Kingdom: Bacteria
• Replicon accession: NC_009379
• Strand: +
• Start bp: 64935
• End bp: 65348
• Gene Length: 414 bp
• Protein Length: 137 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640470212
• Product: 50S ribosomal protein L16
• Protein accession: YP_001154846
• Protein GI: 145588249
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0197] Ribosomal protein L16/L10E
• TIGRFAM ID: [TIGR01164] ribosomal protein L16, bacterial/organelle

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.0000000262847
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTACAAC CAAAGCGTCG CAAGTATCGT AAGGAACAAA AAGGCCGTAA CACTGGTGTG 
GCAACACGCG GTAGTTCAGT AGCCTTTGGT GACTTTGGAT TGAAGGCCGT TGGTCGTGGA 
CGTCTAACTG CTCGTCAAAT CGAGTCAGCA CGTCGCGCAA TGACCCGTCA CATTAAACGT 
GGTGGCCGTA TTTGGATACG CATTTTCCCA GATAAGCCAA TTTCACAAAA ACCTGCTGAA 
GTACGTATGG GTAACGGTAA AGGTAATCCA GAGTACTACG TAGCTGAAAT TCAACCAGGC 
AAAGTGCTCT ACGAGATGGA CGGTGTTGAT GAGCAATTGG CGCGCGAAGC TTTCAAGCTT 
GCAGCAGCTA AGTTGCCTTT ACAGACCACT TTCGTGATTC GCCACTTAGG TTGA 

 

Protein sequence

MLQPKRRKYR KEQKGRNTGV ATRGSSVAFG DFGLKAVGRG RLTARQIESA RRAMTRHIKR 
GGRIWIRIFP DKPISQKPAE VRMGNGKGNP EYYVAEIQPG KVLYEMDGVD EQLAREAFKL 
AAAKLPLQTT FVIRHLG