Gene Pnuc_0054 details

Gene Information

• Locus tag: Pnuc_0054
• Symbol: rplD
• ID: 5051914
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1
• Kingdom: Bacteria
• Replicon accession: NC_009379
• Strand: +
• Start bp: 61694
• End bp: 62314
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 640470206
• Product: 50S ribosomal protein L4
• Protein accession: YP_001154840
• Protein GI: 145588243
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0088] Ribosomal protein L4

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.000000000793849
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAACTTA AGCTTCTCCA GGACAACGGT ACTTTGGGTG CGGGCGTACA AGCTTCACCA 
GAAGTATTCG AACGTGAATA TAACGAAGCA TTGGTACACC AAGTTGTAGT GGCCTACCAA 
GCAAATGCGC GTAGCGGTAA CCGTGCGCAA AAAGACCGTG AGCAAGTTAA GCACACAACC 
AAAAAGCCTT GGCGTCAAAA GGGTACTGGT CGTGCACGTG CTGGTATGAG CTCTTCCCCG 
CTATGGCGTG GAGGTGGTCG TATATTCCCA AATTCTCCAG AAGAGAATTT CAGCCAAAAA 
GTAAACAAGA AAATGTATCG CGCTGGTATG AGATCAATTT TGTCTCAATT AGCTCGCGAA 
GGCCGTTTGA ATGTTGTAGA TCAATTTTCT CTTGACGCTC CAAAGACTAA AGTTTTAGCT 
GACAAAGTTA AAGCAATGGG CTTAGATTCA GTCTTGATTA TTGTTGATCA GGTTAGTGAG 
AACTTGTACT TGGCGTCACG CAACTTGCAT AAGGTTGCTG TATGTGAGCC ACAGCATGCC 
GATCCTTTAG CTTTGGTTCA ATACAAAAAA GTATTGGTTA GCAAAGCAGC GATCGCAAAA 
ATTGAGGAGT TGCTGAAATG A 

 

Protein sequence

MELKLLQDNG TLGAGVQASP EVFEREYNEA LVHQVVVAYQ ANARSGNRAQ KDREQVKHTT 
KKPWRQKGTG RARAGMSSSP LWRGGGRIFP NSPEENFSQK VNKKMYRAGM RSILSQLARE 
GRLNVVDQFS LDAPKTKVLA DKVKAMGLDS VLIIVDQVSE NLYLASRNLH KVAVCEPQHA 
DPLALVQYKK VLVSKAAIAK IEELLK