| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0046 |
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| Symbol | rpoB |
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| ID | 5053127 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | + |
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| Start bp | 47471 |
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| End bp | 51571 |
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| Gene Length | 4101 bp |
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| Protein Length | 1366 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640470198 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001154832 |
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| Protein GI | 145588235 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.148262 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACTACA GCTTCACCGA ACGCAAGCGA GTCCGTAAAA GCTTTGCTAA GCGAGTAAAC
AACCACCAGG TTCCGTACCT GATCGCAACG CAGCTGGAAT CCTACGCTAA ATTTTTACAG
GCTGATAAGC CGGCAATGTC TCGTCTTACT GAGGGACTTC AGGCTGCCTT TACATCAGCA
TTCCCAATTG TGTCTAACAA CGGCTATGCA CGTATGGAAT ACGTGTCTTA CCAGTTATCA
CAGCCACCAT TTGACGTTAA AGAATGTCAA CAGCGTGGTT ACACATACCA CTCTGCCTTA
CGTGCAAAAG TTCGCTTGAT TATTTATGAT CGCGAAGCGC CTACTAAGGT TAAAGAGGTA
AAAGAGAGCG AAGTCTACAT GGGTGAAATT CCACTCATGA CAGAAAACGG CTCTTTTGTG
ATTAATGGTA CTGAGCGCGT GATCGTTTCT CAGTTGCACC GCTCCCCAGG CGTGTTCTTC
GAACACGATA AGGGCAAAAC ACATAGCTCG GGTAAGTTGC TGTTCTCAGC ACGCATCATT
CCTTACCGTG GTTCATGGCT CGATTTCGAG TTTGATCCAA AAGACATTCT TTATTTCCGC
GTTGACCGTC GTCGTAAGAT GCCTGTCACC ATTTTGCTCA AAGCAATTGG TTTAAATAAC
GAACAGATTC TTGCGAACTT CTTTAATTTT GACCATTTTT CATTGACTGC TAATGGCGGT
TCAATGGAAT TTGTTCCAGA GCGTTTGCGT GGTCAGTTGG CTAACTTTGA TGTGCTTGAT
AAGAATGGCG TTGTTGTCAT TCAAAAAGAC AAGCGTATTA ATGCCAAACA CATCCGTGAA
CTCGAAGCAG CTAAGACAAA AACAATCGCC GTTCCAGATG ACTATTTGGT TGGACGTGTG
GTTGCACGCA ATATTGTTGA TCCAGATTCT GGTGAAATCT TGGCTTACGC TAATGATGAA
ATTACTGAGG AGTTGTTGGC AACATTGCGC GATGCAGGCA TCAAGCAATT AGAAACTATC
TATACCAATG ATTTAGATTC TGGCGCTTAC ATTTCTCAGA CATTGCGTAC TGATGAAACA
GCAGATCAAA TGGCTGCTCG TATCGCCATT TACCGCATGA TGCGTCCTGG CGAGCCTCCA
ACAGAAGATG CTGTTGAAGC CTTGTTCCAG CGCTTGTTCT ATAACGAAGA TACTTACGAT
TTGTCACGTG TTGGCCGTAT GAAGGTCAAC AGCCGTTTGA ACCGTCCAGA AATGGAAGGT
CCAATGGTTC TATCAAATGA AGATATTCTC GACACAATTA AGTCTCTAGT AGATTTGCGT
AACGGCAAAG GCGAAGTGGA TGATATCGAT CACTTAGGTA ATCGTCGTGT ACGTTGTGTT
GGCGAGTTGG CTGAAAACCA ATTCCGTGCT GGTTTGTCAC GTGTTGAGCG TGCGGTTAAA
GAACGTCTCG GCCAAGCCGA AACAGAAAAC CTCATGCCGC ATGACTTGAT TAACAGTAAG
CCAATCTCTT CTGCTATTCG TGAGTTCTTC GGTTCTTCAC AGTTGTCCCA GTTTATGGAC
CAAACCAACC CACTTTCAGA GATCACGCAC AAGCGTCGTA TTTCTGCATT GGGACCTGGT
GGTTTGACAC GCGAGCGCGC AGGCTTCGAA GTGCGCGACG TGCATCCAAC CCACTATGGA
CGTGTTTGCC CTATCGAAAC TCCAGAAGGA CCAAACATTG GTTTGATCAA CTCACTCGCT
TTGTTTGCGC GTTTGAATGA GCATGGCTTC CTTGAGACTC CATACCGTAA AGTTTCCAAT
AGCAAGGTAA GCGATGAAGT GGTTTACCTC TCTGCAATTG AAGAAGCGAA GTATGTGATT
GCTCAGGCAA ATGCAACAAT CGACAAGAGC GGTAAGTTGG CCGACGAATT GGTTTCGGCG
CGTCAAGCTG GCGAAACCAT CATGGTAAGC CCAGAGCGCA TTGATTTCAT CGACGTTGCC
CCAAGCCAAA TTGTTTCTGC TGCCGCGTCT CTCGTTCCAT TCTTGGAGCA CGATGATGCG
AACCGTGCTT TGATGGGTGC GAATATGTCA CGTCAAGCGG TTCCTTGCTT GCGTCCTGAT
AAGCCATTGG TTGGCACTGG TTTAGAGCGC ATTGTTGCGG TTGACTCCGG TACGGTTATT
TTGGCAACTC GTGGCGGCAT TGTTGATTAC GTTGATGCAA ATCGTATCGT GATTCGTGTG
AACGATGACG AGACTGCGGC CGGTGAAGTT GGTGTGGATA TTTATAACCT CATCAAGTAC
ACCCGCTCAA ACCAAAATAC CAACATCAAT CAACGTCCAA TCGTTCAGGC CGGTGATCGC
GTAGTCCGTG GTGACGTAGT TGCTGACGGA GCTTCTACCG ATTTGGGCGA ATTGGCTTTG
GGTCAAAACA TGACCGTGGC ATTTATGCCA TGGAACGGTT ACAACTTCGA AGATTCAATC
TTGATCTCCG AGAAGGTGGT TGCCGAAGAC CGTTACACCT CTATTCATAT CGAAGAGTTG
TCGGTTGTTG CGCGCGATAC CAAGTTGGGT TCAGAAGAAA TTACACGCGA TATTTCCAAT
TTGGCTGAGT CACAACTCTC CCGTTTGGAT GAGAGCGGTA TTGTTTACAT CGGTGCTGAA
GTAGAGGCTG GCGACGTTTT AGTTGGTAAG GTAACTCCAA AGGGTGAGAC TACTCTCACT
CCAGAAGAAA AGTTACTGCG TGCGATCTTC GGCGAAAAAG CATCTGACGT TAAAGATACT
TCTTTGCGCG TTCCATCTGG AATGATCGGT ACCGTTATTG ACGTTCAAGT CTTCACCCGT
GAAGGTATTG AGCGCGATGC ACGCGCACAA GCCATTATTC AAGAAGAATT ACAACGTTAT
CGTTTGGACT TAAACGACCA GTTACGTATT GTTGAAGGCG ATGCCTTCAT GCGTTTAGAA
AAACTGTTGA TTGGCAAAGT TGCCAATGGT GGTCCTCAGA AATTAGCTAA AGGCACTAAG
ATCGACAAGG AATACCTTGC CAGCTTAGAT AAATACCATT GGTTCGATGT TCGTCCAGCA
GATGAAGAAG TTGCTACACA AGTTGAAGCA ATCAAATCGT CTATCGAAGC GAAGCGTAAG
CAGTTTGATG AGGCATTCGA AGAGAAGCGC ACCAAGCTTA CTCAAGGTGA TGATTTGCAG
GCTGGCGTAA CGAAGATGGT GAAGGTGTAC TTAGCTGTTA AGCGTCGCTT ACAGCCTGGT
GACAAGATGG CCGGTCGTCA CGGTAACAAA GGCGTGGTTT CTAAAATCGC CCCTGCGGAA
GACATGCCAT TTATGGCTGA CGGACGCCCT GTTGACATCG TCTTGAACCC ATTGGGCGTT
CCTTCCCGTA TGAACGTAGG TCAGATCTTG GAAACCCACT TAGGTTGGGC GGCTCAAGGT
ATTGGTAAGC GTATTGATGA GATGGTTCGT CAACAGGTTA AGCAAGCTGA ACTCCGCAAG
TTCTTGAAGC AGCTTTACAA CGAAACTGGT CGTATCGAAG ATATCGATAA CTTCACTGAT
GAGCAGATCA CAGTTTTGGC TGAGAATTTA CGCCAAGGCT TGCCATTCGC TACTCCAGTG
TTTGACGGTG CAACTGAAGC TGAAATCGGA CGCATGCTCG AGTTGGCTTA TCCAGAAGAA
GTAGCTACTT CTTTGAAGAT GACGCCTTCA CGTCAGCAAA TGATTTTGTG CGACGGCCGT
ACTGGTGATC AGTTTGAGCG TCCTGTAACT GTTGGTGTAA TGCACGTCTT GAAACTCCAC
CATTTGGTCG ATGACAAGAT GCACGCACGT TCAACTGGAC CTTACTCGTT AGTCACGCAA
CAACCACTGG GCGGTAAAGC TCAGTTTGGT GGTCAGCGCT TTGGTGAGAT GGAAGTTTGG
GCCCTCGAAG CATACGGTGC TTCATATGTC TTGCAGGAAA TGCTGACAGT GAAGTCCGAT
GACGTCGCAG GCCGTACCAA GGTTTACGAA AACATCGTCA AGGGCGAGCA CACAATTGAT
GCTGGCATGC CCGAATCCTT CAACGTGTTG GTAAAAGAAA TCCGCTCGTT GGGTATTGAC
ATTGACATGG AGCGCAACTG A
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| Protein sequence | MNYSFTERKR VRKSFAKRVN NHQVPYLIAT QLESYAKFLQ ADKPAMSRLT EGLQAAFTSA
FPIVSNNGYA RMEYVSYQLS QPPFDVKECQ QRGYTYHSAL RAKVRLIIYD REAPTKVKEV
KESEVYMGEI PLMTENGSFV INGTERVIVS QLHRSPGVFF EHDKGKTHSS GKLLFSARII
PYRGSWLDFE FDPKDILYFR VDRRRKMPVT ILLKAIGLNN EQILANFFNF DHFSLTANGG
SMEFVPERLR GQLANFDVLD KNGVVVIQKD KRINAKHIRE LEAAKTKTIA VPDDYLVGRV
VARNIVDPDS GEILAYANDE ITEELLATLR DAGIKQLETI YTNDLDSGAY ISQTLRTDET
ADQMAARIAI YRMMRPGEPP TEDAVEALFQ RLFYNEDTYD LSRVGRMKVN SRLNRPEMEG
PMVLSNEDIL DTIKSLVDLR NGKGEVDDID HLGNRRVRCV GELAENQFRA GLSRVERAVK
ERLGQAETEN LMPHDLINSK PISSAIREFF GSSQLSQFMD QTNPLSEITH KRRISALGPG
GLTRERAGFE VRDVHPTHYG RVCPIETPEG PNIGLINSLA LFARLNEHGF LETPYRKVSN
SKVSDEVVYL SAIEEAKYVI AQANATIDKS GKLADELVSA RQAGETIMVS PERIDFIDVA
PSQIVSAAAS LVPFLEHDDA NRALMGANMS RQAVPCLRPD KPLVGTGLER IVAVDSGTVI
LATRGGIVDY VDANRIVIRV NDDETAAGEV GVDIYNLIKY TRSNQNTNIN QRPIVQAGDR
VVRGDVVADG ASTDLGELAL GQNMTVAFMP WNGYNFEDSI LISEKVVAED RYTSIHIEEL
SVVARDTKLG SEEITRDISN LAESQLSRLD ESGIVYIGAE VEAGDVLVGK VTPKGETTLT
PEEKLLRAIF GEKASDVKDT SLRVPSGMIG TVIDVQVFTR EGIERDARAQ AIIQEELQRY
RLDLNDQLRI VEGDAFMRLE KLLIGKVANG GPQKLAKGTK IDKEYLASLD KYHWFDVRPA
DEEVATQVEA IKSSIEAKRK QFDEAFEEKR TKLTQGDDLQ AGVTKMVKVY LAVKRRLQPG
DKMAGRHGNK GVVSKIAPAE DMPFMADGRP VDIVLNPLGV PSRMNVGQIL ETHLGWAAQG
IGKRIDEMVR QQVKQAELRK FLKQLYNETG RIEDIDNFTD EQITVLAENL RQGLPFATPV
FDGATEAEIG RMLELAYPEE VATSLKMTPS RQQMILCDGR TGDQFERPVT VGVMHVLKLH
HLVDDKMHAR STGPYSLVTQ QPLGGKAQFG GQRFGEMEVW ALEAYGASYV LQEMLTVKSD
DVAGRTKVYE NIVKGEHTID AGMPESFNVL VKEIRSLGID IDMERN
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