Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_0008 |
Symbol | |
ID | 5053435 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | + |
Start bp | 7672 |
End bp | 8874 |
Gene Length | 1203 bp |
Protein Length | 400 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 640470150 |
Product | extracellular ligand-binding receptor |
Protein accession | YP_001154794 |
Protein GI | 145588197 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0939525 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACAAA CTTTGATTTC TATTGCGGCT GCCGCTTTGG TTGCAGTTGC AGGTAATGCT GGTGCGGCAG ATCAACCGCC ATTAAAAATC GGTTTTATTA CAGATATGTC AGGTTTATAT TCCGACATTG ATGGTCAGGG AGGCTTAGAG GCCATGAAGA TGGCGGTTGC AGATTTTGGT GGCACCGTAA ATGGTAGAAA AATTGAAATT ATTTCTGCTG ACCACCAAAA TAAAGCAGAC GTTGCCGCAT CGAAAACAAG AGAGTGGATT GATCAAAATG GCGTAAGCGT TGTTTTTGGC GGTACAAATT CTGGAACCGC CTTAGCCACA GCCAAGGTAG CCGCTGAGAA AAAGCGTATT TATATTAATA ATGGTGCCGG TACATCTGCT TTAACAAATG AGCAATGTAG CCCTTACACA ATTCACTACA CCTATGACAC AATTGCTTTG GCTAATGGCT CAGCCAAAGG CTTGGTTGAT AAGGGTTATA AAAATTGGTA TTTCTTAACT GCGGATTACG CTTTTGGCTA TGCACTTGAA AAAGACGCAT CAAATGTAGT GCTTGCTAAT GGCGGTAAAG TGTTAGGCGA CTCAAAGCAC CCACTAAACG CCAGCGATTT TTCTTCTTAT TTACTCCAAG CTCAAAACTC AAAAGCCCAA GTTCTTGGTT TGGCTAATGC CGGCGGAGAT ACGATTAACT CTGTTAAGGC GGCTAATGAG TTTGGTATTA CCAAAACCAT GAAGCTTGCT GGTTTGTTAG TGTTTATTAC TGATGTGCAC GCTATTGGCA TTAAAAACGC ACAAGGTCTT TTGGCTACTA CCGCATGGTA CTGGGATCAA AATGACCAAA CCCGTAAATT TGCTGGCCGT TTCATGGAAA AAATGAAGCG CATGCCAAGT ATGGTTCAGG CCGGCGACTA CTCATCCACA ATGACTTACC TTAATGCGGT TAAAGCAGCG GGTACAGATG ATTCCGATAA GGTAATGGCC CAATTACGCA AGACCAAAAT TAACGATATG TTCACCAAAA ATGGCTATAT CCGCAAAGAT GGCACCATGG TTCACGACAT GTACCTCTAT GAAGTGAAAA CTCCAGCAGA AGTTAAAAGC CCATGGGATT ACTACAAGCT TGTATCCACA CTTTCTGGAG AAAAAGCTTT CACAATTCCG CCTGATTCAA AATGCGCTTT GTTGAATAAG TAA
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Protein sequence | MKQTLISIAA AALVAVAGNA GAADQPPLKI GFITDMSGLY SDIDGQGGLE AMKMAVADFG GTVNGRKIEI ISADHQNKAD VAASKTREWI DQNGVSVVFG GTNSGTALAT AKVAAEKKRI YINNGAGTSA LTNEQCSPYT IHYTYDTIAL ANGSAKGLVD KGYKNWYFLT ADYAFGYALE KDASNVVLAN GGKVLGDSKH PLNASDFSSY LLQAQNSKAQ VLGLANAGGD TINSVKAANE FGITKTMKLA GLLVFITDVH AIGIKNAQGL LATTAWYWDQ NDQTRKFAGR FMEKMKRMPS MVQAGDYSST MTYLNAVKAA GTDDSDKVMA QLRKTKINDM FTKNGYIRKD GTMVHDMYLY EVKTPAEVKS PWDYYKLVST LSGEKAFTIP PDSKCALLNK
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