Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnec_1778 |
Symbol | def |
ID | 6184595 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
Kingdom | Bacteria |
Replicon accession | NC_010531 |
Strand | - |
Start bp | 1549407 |
End bp | 1549922 |
Gene Length | 516 bp |
Protein Length | 171 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 641672276 |
Product | peptide deformylase |
Protein accession | YP_001798445 |
Protein GI | 171464332 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
TIGRFAM ID | [TIGR00079] peptide deformylase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 0.818545 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 71 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCTTTGT TAACCGTCCT TTGTTATCCA GACTCCCGCT TGCACAAGGT TGCAAAACCG GTAGCGCAGG TCGACGCTCG CATTAAAAAA ATTGTTGCCG ATATGGCAGA CACTATGTAT GAAGCTCCCG GTGTTGGTTT GGCAGCAACG CAGGTAGACA TTCATGAGCG CATCGTAGTA ATTGATGTAT CTGATGAGCA AAACGAATTA ATGGTTTTTA TTAATCCAGA AATTGTTTGG ACAAGTTCCG AAACAAAATC ATGGCGCGAA GGTTGTTTAT CTGTCCCGGA GTTTTATGAT GAAGTTGAAA GGCCAGCGGA AATTCGAGTT AAAGCTTTAG ACATAGATGG CAAAGAGTTC GAAATTGAAG CTGACGGTTC GTTAGCAGTA TGTTTGCAGC ACGAGTTAGA TCATTTGCAA GGAAAAGTAT TTGTTGAATA TTTATCGATA TTCAAAAGAA CTCGTATTTC TCAAAAAATG AAGAAGCGCG CCAAAGAATT AATAGGTCAG CGCTAA
|
Protein sequence | MALLTVLCYP DSRLHKVAKP VAQVDARIKK IVADMADTMY EAPGVGLAAT QVDIHERIVV IDVSDEQNEL MVFINPEIVW TSSETKSWRE GCLSVPEFYD EVERPAEIRV KALDIDGKEF EIEADGSLAV CLQHELDHLQ GKVFVEYLSI FKRTRISQKM KKRAKELIGQ R
|
| |