| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1671 |
|---|
| Symbol | |
|---|
| ID | 6183910 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 1463164 |
|---|
| End bp | 1463877 |
|---|
| Gene Length | 714 bp |
|---|
| Protein Length | 237 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641672186 |
|---|
| Product | hydrolase of the alpha/beta superfamily |
|---|
| Protein accession | YP_001798356 |
|---|
| Protein GI | 171464243 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2945] Predicted hydrolase of the alpha/beta superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 72 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAGCC GCACAAAAGT AATTCATATT GAAGGCATAG TTGGATCAAT GGAGATGTCC
ATTGATCTGC CTGATGAATT AAAAAATGAT CCTAGCTTTG TGGTTCGGGG CTTGGCTCTC
GTGGCCCATC CTCATCCTTT GATGGGTGGA ACTATGGACA ACAAAGTCGC GCAAACAATG
GCGCGCGCTT TTAACCAATT AGGTTACGTT AGCGTGCGTC CAAACTTTCG TAGCGTAGGT
GGAACTGCAG GGGTTCATGA CGATGGCGTC GGTGAACTAG ATGATTTGCT TCATGTTACC
GATTGGATGC GCACACCATC AAGCTGGGGC GAATTTGAGA CAACCGCAAG CCAAGCCTGG
GTGGCGAGCG CCAATACTTT GCCATTAGTT GTTTCTGGTT TTTCTTTTGG AAGTTTTGTC
GGCAGTCATT TGGTACAAAG ACTTTCTGAC CTAGGACGAC CAGCCGAACG CCTTGTAATG
GTCGGTAGCG CTGCTGGTAA ATGGACGCTG GCTCAAGTCC CTACTGATAC GATTTTGATT
CACGGCGAAC TGGATGAGAC GATTCCTTTG ATTGATGTTC TCGATTGGGC ACGTCCTCAG
GAATTGACGG TACAAGTAGT TCCTGGCGCC GATCATTTTT TTCATCGTCG CTTACATTGC
ATTCGCAACA TCATTACTGG CGCTTGGTTA GGTATGCCAG ATCACCGTAA CTAA
|
|---|
| Protein sequence | MNSRTKVIHI EGIVGSMEMS IDLPDELKND PSFVVRGLAL VAHPHPLMGG TMDNKVAQTM
ARAFNQLGYV SVRPNFRSVG GTAGVHDDGV GELDDLLHVT DWMRTPSSWG EFETTASQAW
VASANTLPLV VSGFSFGSFV GSHLVQRLSD LGRPAERLVM VGSAAGKWTL AQVPTDTILI
HGELDETIPL IDVLDWARPQ ELTVQVVPGA DHFFHRRLHC IRNIITGAWL GMPDHRN
|
|---|
| |