| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1503 |
|---|
| Symbol | |
|---|
| ID | 6183745 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 1305885 |
|---|
| End bp | 1306748 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 641672033 |
|---|
| Product | 4-hydroxybenzoate polyprenyl transferase |
|---|
| Protein accession | YP_001798205 |
|---|
| Protein GI | 171464092 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0382] 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases |
|---|
| TIGRFAM ID | [TIGR01474] 4-hydroxybenzoate polyprenyl transferase, proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 68 |
|---|
| Fosmid unclonability p-value | 0.943321 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTTAA AAGAGCGTTT TATTTCTTAT GGGTATTTAA TTAGGTTGGA TAAACCTATT
GGCACGCTAT TGCTGTTGTG GCCTACACTC TGGGCTCTTT GGCTGGCAAG CAGTGGCGTA
CTAGATTTAT CTATTTTGCT GATATTTGTG GCGGGCACTT TTTTGATGCG CAGCGCAGGA
TGTGCAATCA ATGACTATGC CGATCGCGAC TTTGATCGCC ATGTTAAAAG AACACAAGGG
CGTCCAGTTA CCAGTGGAAA AATCTCTGCT AAAGAGGCAG TGGCTGTAGC GAGTTTTTTG
GCCTTATGCG CTTTTTTATT AATTCAGCCT TTGAATGCCT TTACCAAGCA ACTTTCAGTT
CTTGCGCTAC TAGTAGCCTT TATCTATCCT TTCACCAAGC GCTTCTTTGC GATGCCTCAA
ACAGTCTTGG GAATAGCTTT TGGCTTTGGG ATTCCAATGG CCTATGCGGC CATATTGGAT
TTCATTCCTC TAGAGGCTTG GTTCTTATTT ACTGGGAATA TATTTTGGGC GATCGCATAC
GACACCGCTT ACGCCATGGT TGATCGAGAT GACGATTTGC GCTTAGGATT GAGAACCTCT
GCTATCACTT TTGGTCAGTA CGATGTAGTA GTGATAGCAA TAAGCTATGG CATGCTTTTT
TTAAGTCATT TATGGGTGGC GCAGCTAGCC AACCTAAGCA ATTATTTTTT GGTGGGATGG
TTCGCGGCAT TAGCTTGCGC AATTTATCAT CTAAAACTAG TATCTACTCG CAATAGAGAG
AATTGCTTTA AGGCATTCCG CCACAATAAC TGGTTGGGCG GATTTTTATT CCTGGGAATT
GTATTGGGTC TAGGAGTGCA TTAG
|
|---|
| Protein sequence | MSLKERFISY GYLIRLDKPI GTLLLLWPTL WALWLASSGV LDLSILLIFV AGTFLMRSAG
CAINDYADRD FDRHVKRTQG RPVTSGKISA KEAVAVASFL ALCAFLLIQP LNAFTKQLSV
LALLVAFIYP FTKRFFAMPQ TVLGIAFGFG IPMAYAAILD FIPLEAWFLF TGNIFWAIAY
DTAYAMVDRD DDLRLGLRTS AITFGQYDVV VIAISYGMLF LSHLWVAQLA NLSNYFLVGW
FAALACAIYH LKLVSTRNRE NCFKAFRHNN WLGGFLFLGI VLGLGVH
|
|---|
| |