Gene Pnec_1417 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_1417 
Symbol 
ID6183758 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp1213835 
End bp1215793 
Gene Length1959 bp 
Protein Length652 aa 
Translation table11 
GC content48% 
IMG OID641671958 
ProductDNA primase 
Protein accessionYP_001798130 
Protein GI171464017 
COG category[L] Replication, recombination and repair 
COG ID[COG0358] DNA primase (bacterial type) 
TIGRFAM ID[TIGR01391] DNA primase, catalytic core 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones73 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCACTCA TTCCACAATC CTTTATCGCC GATCTCTTAA ATCGAGTAGA CATCGTTGAT 
GTGGTTGGGC AGCACGTAAA ACTAAAAAAA GCGGGCGCGA ACTTTCAAGG TTTGTGCCCC
TTTCATTCAG AGAAGTCTTC TTCTTTTTCG GTGTCGCCCA CTAAGCAATT TTATCACTGC
TTTGGATGTG GTGCGCATGG GTCTGCTATT AGCTTCTTGA TGGAGTACTC CGGCCTTGGA
TATGTAGATG CGATTGAAGA TTTAGCGCGC TCTGCAGGCC TTGATGTTCC GCGTGAAGAA
CGCACTGCCA ATGATGTCGC TCGTCAGCAG CAAGCTATGG CATTAAGTGA AGTGATGAGT
TCTGCTGCTG ATTGGTATCG CCAGCAACTC AAGGGTAATA CCCGAGCGGT CGAATATCTC
AAAGGCAGAG GCCTTACAGG TGAGATCGCT AAACGCTACG CCTTGGGCTA TGCGCCTGAT
GGCTGGCAAG GTCTAGAGAC TGTCTTTGGG GCCTATTCCA ATGATGAAGT GGCAAAGACT
TTATTGGAGA GTGGCTTACT CATCCAGAGT GAGCAAGCCG AAGGCAGCCA ATCCATGAAG
CGCTACGATC GTTTCCGTGA TCGCATCATG TTCCCGATTC GCAATCCTAA AGGCCAAACC
ATTGGTTTCG GCGGGCGTAT TTTGGATCAA GGTGAGCCCA AGTATTTGAA TTCACCAGAG
ACGCCACTCT TTTCGAAGGG CAACACACTC TATGGCTTGT TTGAAGCAAG ACAAGCGATT
CGTGCGCAAG AGTATGTTCT TGTATGCGAA GGTTATATGG ATGTAGTGGC ATTAGCGCAA
TTGGGATTTC CAAATGCGGT TGCTACTTTA GGTACTGCCT GCACTGCCAA TCATGTTCGC
ATGCTATTGC GTCAAACCGA TAAGGTGGTG TTCTCATTTG ATGGCGATTC TGCTGGACAG
CGTGCTGCGC AGCGCGCACT GGAGGCATGC CTGCCTCTCA TGTCAGACGA TAAAGAAATT
CACTTTTTAT TCTTGCCAAC CGAACATGAT CCCGATAGTT ATGTGCGTGC CTATGGCGCA
CCAGCTTTTG AAAAAGTCAT TAAAGAGGCA ACGTCTATCT CTAGTTTCTT CTTTAAGGTG
GTGAGCGAAG GCCATGAGCT CACTACTCCG GAGGGTAGAG CCCATACGCA TCATGCAGCT
AAACCCCTTT TACTTTCTAT GCCGCCAATT GCACTACGCA CACAAATCTT GCGTGAGCTG
GCTATTCGAA CTAATACAAC TCCTGCAGAG CTTGAAGCAT TTTGTGGTTT AACAGTAGCG
CCTGCGCCGG TGCGACAGAC GACTTATCAG CCGATGCAAG CAAGAACTCC AGGTGGTCAT
AATCAGAGCG CTTTTTCAGG CATTGGTAAT CGTCAAGGAG CGCCATGGCA GGCATCTAAA
GGATCTGCAA AACGGGTTGC AACACAAAAC ATTGAGCCCC CTAAAGCACC AACTGATTTA
GCGGAACAAA TGTTGCGTGT GATTATTCAA TTTCCGCATT TAGGAAAGGC ATTAGATGCC
AATAAACGTG CGCTTGCATT AAAAGCAGCA GAGCAACGAT CAGAAAAAGC CCATGCCTTA
ATGAAAGATT TTTTGGCGCA GTGTGATTTG GTTGAGTTGA TTCCTGGCGA GGGTAATAAG
CCAGCTACTG TAGGAGCAGG AGCCTTTGCG ATGTTTCAAG ATCAACTCTC TCGCAGCGAG
TTAGCCCCTT TGTATGAGGT CCTCAGAAAT CGCGTAATGG GCTCTGATTT GGAGATCGAA
GGCGCTGCCG CGGACCTTGA TGGGGCATTT AAAAAGCTGG AATTGATCCA CCTTAAGCAA
GAAATGACTG AAATTGCTCA AAAGATTGCT GGAGGCACAG CAACCGAGCA AGATAAAGCC
CGTTATCGCG AATTGGGCGA AAAGCTGAAA TTCTCCTAA
 
Protein sequence
MALIPQSFIA DLLNRVDIVD VVGQHVKLKK AGANFQGLCP FHSEKSSSFS VSPTKQFYHC 
FGCGAHGSAI SFLMEYSGLG YVDAIEDLAR SAGLDVPREE RTANDVARQQ QAMALSEVMS
SAADWYRQQL KGNTRAVEYL KGRGLTGEIA KRYALGYAPD GWQGLETVFG AYSNDEVAKT
LLESGLLIQS EQAEGSQSMK RYDRFRDRIM FPIRNPKGQT IGFGGRILDQ GEPKYLNSPE
TPLFSKGNTL YGLFEARQAI RAQEYVLVCE GYMDVVALAQ LGFPNAVATL GTACTANHVR
MLLRQTDKVV FSFDGDSAGQ RAAQRALEAC LPLMSDDKEI HFLFLPTEHD PDSYVRAYGA
PAFEKVIKEA TSISSFFFKV VSEGHELTTP EGRAHTHHAA KPLLLSMPPI ALRTQILREL
AIRTNTTPAE LEAFCGLTVA PAPVRQTTYQ PMQARTPGGH NQSAFSGIGN RQGAPWQASK
GSAKRVATQN IEPPKAPTDL AEQMLRVIIQ FPHLGKALDA NKRALALKAA EQRSEKAHAL
MKDFLAQCDL VELIPGEGNK PATVGAGAFA MFQDQLSRSE LAPLYEVLRN RVMGSDLEIE
GAAADLDGAF KKLELIHLKQ EMTEIAQKIA GGTATEQDKA RYRELGEKLK FS