| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1336 |
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| Symbol | |
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| ID | 6183454 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 1153718 |
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| End bp | 1154497 |
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| Gene Length | 780 bp |
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| Protein Length | 259 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641671893 |
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| Product | Extradiol ring-cleavage dioxygenase class III protein subunit B |
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| Protein accession | YP_001798066 |
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| Protein GI | 171463953 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3384] Uncharacterized conserved protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.0000000105627 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACTAGCC ATCGCCAACC TGCAGTATTT GCTGGCCATG GCAGTCCGAT GTACGCCATA
GAGCCTAACC GCTATACAGC GGCATGGTCT GCTCTAGCAA AAACTTTTAA ACGGCCAGAC
GCTATATTGG TGATCTCGGC TCATTGGGTA ACTCGAGGTG CATGGGTTAC CGCAATGTCT
AAACTCAAAA CAATTCACGA CTTCGGCGGA TTTCCACAAG CGCTTTTTGA TATTCAATAT
CCTGCGCCAG GCAGTCCAGC TTTGGCGGAC CGTGTTCAAG AATTATTAAG CGTTCCAGTA
GTGCTTGAAG AGAATGAGTG GGGCATTGAT CATGGTGCTT GGTCCATTCT GAAGTACATG
TACCCAGATG CTGATGTGCC CGTAGTGCAG TTGAGTTTAG ATGGGTCGAT GTCTGCGCGT
GAGCATTACG AGTTAGCTAA ACAGTTGCGC CCTTTGCGCG ATGAAAACAT TCTCATTCTG
TCGAGCGGCA ATGTGGTTCA TAACTTGCGC ACCATTCATT GGCAAGAGGA CGCCCAGCCT
TATCCTTGGG CGAAAGACTT CAATGACTTT TTTGTCTCTG AAATACGTGC TAATCACCAC
GAGTCTTTGA TTGATTGGGA GCGGTATGGT GATGCGGCTC ATCTGTCTAT TCCAACCGCA
GAACACTATT GGCCTGCTCT GTATACCCTA GCTTTACAAG AAGAGGGAGA GCAAGTAAAA
ATCTATTCGG ACGGCATAGA GATGAGTTCC ATCAGCATGT TGGGTTTCTC CATTCAATAA
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| Protein sequence | MTSHRQPAVF AGHGSPMYAI EPNRYTAAWS ALAKTFKRPD AILVISAHWV TRGAWVTAMS
KLKTIHDFGG FPQALFDIQY PAPGSPALAD RVQELLSVPV VLEENEWGID HGAWSILKYM
YPDADVPVVQ LSLDGSMSAR EHYELAKQLR PLRDENILIL SSGNVVHNLR TIHWQEDAQP
YPWAKDFNDF FVSEIRANHH ESLIDWERYG DAAHLSIPTA EHYWPALYTL ALQEEGEQVK
IYSDGIEMSS ISMLGFSIQ
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