| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1315 |
|---|
| Symbol | |
|---|
| ID | 6183175 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 1138272 |
|---|
| End bp | 1140980 |
|---|
| Gene Length | 2709 bp |
|---|
| Protein Length | 902 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641671876 |
|---|
| Product | DNA gyrase subunit A |
|---|
| Protein accession | YP_001798049 |
|---|
| Protein GI | 171463936 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit |
|---|
| TIGRFAM ID | [TIGR01063] DNA gyrase, A subunit
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000000857491 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 3.4629599999999997e-25 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGAACAAG CCGCTAAAGA AACACTACCA ATATCCCTCG AAGACGAAAT GCGGCGGTCC
TATTTGGACT ACGCAATGAG CGTCATCGTC GGCAGAGCCC TGCCAGACGT GCGTGACGGC
CTCAAACCGG TTCACCGCCG GGTCTTATTC GCAATGTATG AATTAAACAA CGATTGGAAC
CGAGCTTACA AAAAATCTGC CCGTATAGTT GGCGATGTAA TCGGTAAATA CCATCCGCAC
GGCGATTCTG CGGTGTATGA CACGATCGTT CGGATGGCCC AGGACTTCTC TCTGCGCTAT
ATGCTGGTTG ACGGGCAGGG TAACTTTGGC TCCGTAGACG GCGATAACGC TGCTGCGATG
CGGTATACTG AGATCCGTCT CCGGAAGATT GCCCATGAGC TTTTGGCTGA TTTGGATAAG
GAAACGGTCG ATTTTGGGCC AAATTACGAC GGTAGCGAGA AAGAACCTCT GATTCTGCCG
GCCAAAGTGC CTAATTTGCT GATAAACGGC AGTTCTGGCA TTGCCGTGGG TATGGCGACT
AATATTCCTC CCCATAACCT GGATGAGGTG GTTACGGCCT GTCTGCACGT CCTGCACAAC
CCAGAATGCA CGATTGATGA GCTCATTGAG ATCATTCCTG CGCCTGATTT CCCAACCGCC
GGCATCATTT ATGGCGTTCA AAGGGTCCGT GAGGGCTATC GCACTGGTCG TGGGCGCGTG
GTTATGCGTG CCAAGACTCA CTTCGAAGAT TTGGATAAGG GCACACGTCA AGCCATCATT
GTTGATGAGT TGCCATATCA AGTTAATAAA AAGAACTTGC TCGAGCGCAT TGCTGAGTTA
GTAAACGAGA AAAAGGTTGA AGGTATTTCT GATTTGCGTG ATGAATCAGA TAAGTCCGGT
ATGCGAGTTG TGATTGAACT CAAGCGTGGT GAAGTGCCTG AAGTGGTTCT TAACAATTTG
TATAAGAGCA CTCAACTGCA AGATAACTTC GGTATGAACA TGGTGGCATT GGTTGACAAC
CAACCACGCT TGTTGAACTT GAAGCAAATG CTTGAGTACT TCTTGCAACA TCGTCGTGAA
GTAGTTACAC GTCGTACGAT TTTTGAATTG CGTAAAGCGC GTGATCGCGG TCACGCCTTG
GAAGGTTTGG CAGTTGCATT AGCAAACATC GATGAGTTCA TTGCGATTAT TAAAGCTGCT
GCGAACCCAG TGATTGCTAA ACAAGAGTTG ATGGGTAAAG CTTGGGATTC CTCGATGGTG
CGCGAGATGT TGGCGCGTGC TGAGACCGAT ACCCCAGGCG GCCGTAACGC CTATCGCCCA
GAAGGCTTGC TGCCTGAGTA TGGTATGCAA ACCACTGGCT TATATCGCTT GTCAGATAGT
CAAGCGCAAG AAATTTTGCA GATGCGTTTG CAACGCTTGA CTGGTCTTGA GCAAGACAAG
ATCGTTAACG AATACAAAGA AGTCATGGCG GAGATTTCTG ACTTGCTTGA CTTGTTAGCT
AAGCCAGAAC GTGTCACACA AGTAATTGAG GCTGAACTTA AAGAAGTTCA ATCTGAATTT
GGTGTTGCAG GTGGCGATAC TGGTCGTCGT TCATTTATTG AAGTGAATGC AACCGAACTT
TTCACAGAAG ATTTAATTAC GCCGCAAGAT TTGGTAGTGA CACTTTCAAA TACTGGTTAT
ATGAAGAGTC AGCCGCTGAG TGAATACCGC GCACAAAAAC GTGGTGGGCG CGGTAAGCAA
GCTGCTGCCA CTAAGAACGA AGATTGGATT GAAACGCTCT TCGTGGCGAA TACGCACGAT
ACGATTTTGT GCTTCTCTGA TCGGGGTCGC ATGTATTGGC TTAAGGTTTG GGAAGTTCCA
CAAGGAAGTC GTACTTCCCG TGGCAAGCCT ATCGTCAATA TGTTCCCGCT GATTGAGGGC
GAGAAGATCA CAGTGATTCT GCCAATTAAG GGCTATCAAG ACAATCAGTA TGTATTTATG
GCTACTAGCT TGGGTACTGT GAAGAAGACG CGCTTATCCG ACTTCTCTAA TCCACGTAAG
GCCGGCATTA TTGCGGTTGA CTTAAACGAA AACGACTTCT TAGTTGGTGC TGCAATTACA
GATGGTCAAC ACGACGTGAT GTTGTTTTCT GACGCTGGTA AAGCTGTGCG CTTTGACGAG
AATGATGTTC GTCCAATGGG TCGTACAGCA CGCGGTGTAC GAGGCATGAA CTTGGGCGAA
GGCCATCAAG TGATCGCTAT GTTAGTTGCG CCAGCTGAGG CTGCAGAAGG TGTTGAGGCG
GCTGTGGTTG ATGCAAACGG CATTGCGATC CCAAGCAGTG TGTTAACTGC AACAGAGAAT
GGTTACGGCA AACGTACGCC AATCACTGAA TACACTCGTC ATGGTCGCGG TACCAAGGGC
ATGATTGCGA TTCAGACGTC TGAGCGTAAC GGCAAGGTAG TTGCTGCTGC CTTGGTATCC
CCAGAAGATC AAATCATGTT GATTACCACC GGTGGCGTTT TGGTGCGCAC ACGCGTTTCT
GAAATTCGTG AGATGGGTCG CGCTACTCAA GGCGTTACCT TGATCAACGT GGATGAGGGT
ACTCGTTTGT CTGGCTTGCA GCGTATTGCT GAAAGCGATT CGGATGAAGA TACTGATGAT
GCAGAAGGCG GCGATATTTC TGCGGATCCA GCAACCGATT CTAATGACGA TACGGCAGGT
GACGCTTAA
|
|---|
| Protein sequence | MEQAAKETLP ISLEDEMRRS YLDYAMSVIV GRALPDVRDG LKPVHRRVLF AMYELNNDWN
RAYKKSARIV GDVIGKYHPH GDSAVYDTIV RMAQDFSLRY MLVDGQGNFG SVDGDNAAAM
RYTEIRLRKI AHELLADLDK ETVDFGPNYD GSEKEPLILP AKVPNLLING SSGIAVGMAT
NIPPHNLDEV VTACLHVLHN PECTIDELIE IIPAPDFPTA GIIYGVQRVR EGYRTGRGRV
VMRAKTHFED LDKGTRQAII VDELPYQVNK KNLLERIAEL VNEKKVEGIS DLRDESDKSG
MRVVIELKRG EVPEVVLNNL YKSTQLQDNF GMNMVALVDN QPRLLNLKQM LEYFLQHRRE
VVTRRTIFEL RKARDRGHAL EGLAVALANI DEFIAIIKAA ANPVIAKQEL MGKAWDSSMV
REMLARAETD TPGGRNAYRP EGLLPEYGMQ TTGLYRLSDS QAQEILQMRL QRLTGLEQDK
IVNEYKEVMA EISDLLDLLA KPERVTQVIE AELKEVQSEF GVAGGDTGRR SFIEVNATEL
FTEDLITPQD LVVTLSNTGY MKSQPLSEYR AQKRGGRGKQ AAATKNEDWI ETLFVANTHD
TILCFSDRGR MYWLKVWEVP QGSRTSRGKP IVNMFPLIEG EKITVILPIK GYQDNQYVFM
ATSLGTVKKT RLSDFSNPRK AGIIAVDLNE NDFLVGAAIT DGQHDVMLFS DAGKAVRFDE
NDVRPMGRTA RGVRGMNLGE GHQVIAMLVA PAEAAEGVEA AVVDANGIAI PSSVLTATEN
GYGKRTPITE YTRHGRGTKG MIAIQTSERN GKVVAAALVS PEDQIMLITT GGVLVRTRVS
EIREMGRATQ GVTLINVDEG TRLSGLQRIA ESDSDEDTDD AEGGDISADP ATDSNDDTAG
DA
|
|---|
| |