| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1252 |
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| Symbol | |
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| ID | 6183521 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 1085858 |
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| End bp | 1087297 |
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| Gene Length | 1440 bp |
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| Protein Length | 479 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641671825 |
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| Product | DEAD/DEAH box helicase domain protein |
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| Protein accession | YP_001797999 |
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| Protein GI | 171463886 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.225431 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 59 |
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| Fosmid unclonability p-value | 0.30978 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGACAAATA CTGCTACTGA AATAAATTCT TCTACAGGGG TTAGCGAAGC TGCTACCCCT
GACGCTACAA GCGCTACCCC TCCAGCAACA ATTACTTTCG CTGATTTTGG TTTAGACCCG
CAAATTCAAA AAGCGGTCGC TGAACAGGGT TATAACACTC CGACTCCAAT TCAAGCGCAA
TCGATTCCGC ACGTTTTAGC GGGAAACGAT CTCATGGGCG CTGCGCAAAC TGGAACTGGT
AAGACAGCCG CTTTTGTGTT GCCGATTATT CAAAAGATTT TGCGTCATGC TAGCAATAGT
GCCTCACCGG CACGTCATCC GATTCGTGCG CTTGTTCTCA CACCAACCCG CGAGTTAGCG
GTGCAAGTGG CAGAAAATGC CGCAAGCTAT TCTAAGCATA CCGATCTACG TGCCGCAGTA
GTTTATGGCG GCGTAGATAT GAAGGAGCAG GTTGCGATTT TGCGCAATGG CGTAGAAATC
TTGATCGCCA CTCTCGGACG TTTACTGGAT CACATCGGCT CTAAAGTGGC CAATCTCTCT
CAAGTAGAGA TCTTGGTCTT AGACGAAGCA GACCGCATGC TTGACATGGG CTTCTTGCCG
GACCTGCAAC GTATCATTAG TTTGATTCCG GCACAAAGAC AGACTCTATT GTTTTCGGCT
ACTTTCTCTC CAGAAATCAA AAAGTTGGCG CAAAGCTATT TACGCTCTCC AGTAACTGTT
GAGGTGGCAC GTCAAAATGC GGCTGCCGAT ACCGTGAAAC AGGTGGTGCA TATGGTTTCC
TCTGCGGATA AGCAACGTGC GATTGTTAAA GTACTTGAAG CGCGCGCACG TGCTGGCTTG
TCACGCCAAT GCATCATCTT TACAAATAGT CGTTTGGGCT GCGCAAAATT ATCTCGTACG
CTTGAGCGTG ATGGTATTAA AGCGGGCGCG ATTCATGGCG ATAAGGGTCA AGGTGAACGT
ACATTAACTT TGGATGCCTT TAAGTCGGGA GCAATTGAAG CATTGGTAGC AACCGATGTG
GCTGCGCGAG GTTTGGATAT CCCGGATATG CCTTGTGTGA TTAATCACGA ATTACCCTAC
AACGCAGAAG ACTTTATTCA CCGTATTGGA CGAACAGGTC GTGCCGGCAG TAAAGGTGAT
GCAATCGCAT TGGTAGATCT GAGTGAAAAG CGCTTACTCG ACGATATTGA AAAGTTGATG
AAGCGTAAAT TGGATGTGAA GCCTTTGCCT GAGGGTGCGT CTTTACAAAG TCGCCCATCA
TCTAGTGGTT ATGGCAGTGC TCCGGCAAAA ATGTCAGACC CCTTCTTCTA TAAGCCTTAT
GAGCCATCCA CATCTACAGC ATCTGCTACA GATACTGCAA AGCCTGAAGA GAAAAAAGTA
GGTATTAAGC CTGCCAAGCC CGCTGTTGGT GCTTTACTCG GTGGCTTTAA AAAGAAATAA
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| Protein sequence | MTNTATEINS STGVSEAATP DATSATPPAT ITFADFGLDP QIQKAVAEQG YNTPTPIQAQ
SIPHVLAGND LMGAAQTGTG KTAAFVLPII QKILRHASNS ASPARHPIRA LVLTPTRELA
VQVAENAASY SKHTDLRAAV VYGGVDMKEQ VAILRNGVEI LIATLGRLLD HIGSKVANLS
QVEILVLDEA DRMLDMGFLP DLQRIISLIP AQRQTLLFSA TFSPEIKKLA QSYLRSPVTV
EVARQNAAAD TVKQVVHMVS SADKQRAIVK VLEARARAGL SRQCIIFTNS RLGCAKLSRT
LERDGIKAGA IHGDKGQGER TLTLDAFKSG AIEALVATDV AARGLDIPDM PCVINHELPY
NAEDFIHRIG RTGRAGSKGD AIALVDLSEK RLLDDIEKLM KRKLDVKPLP EGASLQSRPS
SSGYGSAPAK MSDPFFYKPY EPSTSTASAT DTAKPEEKKV GIKPAKPAVG ALLGGFKKK
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