Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnec_1129 |
Symbol | |
ID | 6183331 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
Kingdom | Bacteria |
Replicon accession | NC_010531 |
Strand | - |
Start bp | 984436 |
End bp | 985851 |
Gene Length | 1416 bp |
Protein Length | 471 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641671732 |
Product | oxygen-independent coproporphyrinogen III oxidase |
Protein accession | YP_001797909 |
Protein GI | 171463796 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
TIGRFAM ID | [TIGR00538] oxygen-independent coproporphyrinogen III oxidase |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 56 |
Fosmid unclonability p-value | 0.101804 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACTTCG CAGTGAATCC ATCATCAATC GAAGATAAGG ATGTCTTATT TCATCCTGAG CTACTGAAAA AATTTGATAT TAATGGCCCT CGCTATACCT CTTACCCTAG TGCCGATCGC TTTCATGGTG ACTTTGCCGA AGCAGATTAC CTAGGTGCCC TAGAGAGAGT CGCAAAAGCG GATGAGCCTC TGTCCTTATA TTTTCATCTG CCGTTTTGCC CCAATATTTG CTATTACTGT GGTTGCAACA AAATTATTAC CAAAGACCAT GGACGTAGTG CCAAATACAT TAAGTATCTA TCCAAAGAAA TGGCCATGGT TACTAAAGCT ATGGGTGCTC AGAAAAAGAT TCTGGTATCC CAGTTGCATT GGGGTGGCGG CACACCGACC TTCTTATCTC ATGAAGAGAT GATTGAGCTT ATGCACCACA CCCGCGAGCA TTTTGAATTG CTGCCCGGTG GTGAGTACTC AATTGAGATT GATCCTAGGC GGGTTACAGA AAAAGATATC GCGCTTTTGG CTGAATTGGG TTTCAATCGC ATCAGTCTTG GTGTGCAAGA CTTTAATTTA GCGGTACAAG AGGCGGTCCA TCGCGTTCAA ACCATTGAGG AAACTCAAGC GGTGATAAAT TGGTCCCGAA AGTATGGCTT TAAATCACGT AGCGTAGATT TAATCTATGG ACTTCCCAAG CAGACACCGG TAACCTTTAA AGAAACGGTT GATGCGGTAT TGGCAATGAA TCCTGATCGC TTATCAGTTT ATAACTATGC GCACTTGCCG CATATCTTTA AACCTCAGCG TCGCATTGCT GAAGCAGACT TGCCGCCAGC CGCAGATAAA TTAGACATTC TTTCAAATAC GATTAAGCGT CTGGGTGAAG CTGGTTATGT CTTTATCGGC ATGGATCATT TTGCAAAGCC CAACGATGAA TTGGCGATTG CACAAAAAGA AGGAAAGCTC CATCGTAATT TCCAGGGTTA CTCTACTCGG GCAGAGTGTG ATCTATTGGC GTTTGGTATT TCTTCTATTG GCAAGGTCGA TGACTGCTAT TCCCAGAATG TGCGTACTTT AGATGAGTAT TACGAAGCGC TTGATAGCGG ACATTTGCCA GTTCTACGTG GCCTGCGCCT GGATCAGGAT GATCTCATGC GCCGCGAGTT AATTGGTGAG TTGATGTGTC AATTTGCCTT GGATACGAAG TCCTTTGCAA AAACACATCA GATTGATTTC CCAACTTACT TCAAAACCGA GATAGAAGAG TTAAAGGGCC TGGGTGAAGT TGGACTCCTG GATTGGGAGG GGGAAACCAT CTTGGTTCCA ACTAAGGGGC GTCTGCTTGC AAGGCGAGTG GCCATGACCT TTGATCGACA CCTCAGGGAA TCTCAGGCAA AAGGCACTTA CTCCAAGGTT TTATAG
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Protein sequence | MNFAVNPSSI EDKDVLFHPE LLKKFDINGP RYTSYPSADR FHGDFAEADY LGALERVAKA DEPLSLYFHL PFCPNICYYC GCNKIITKDH GRSAKYIKYL SKEMAMVTKA MGAQKKILVS QLHWGGGTPT FLSHEEMIEL MHHTREHFEL LPGGEYSIEI DPRRVTEKDI ALLAELGFNR ISLGVQDFNL AVQEAVHRVQ TIEETQAVIN WSRKYGFKSR SVDLIYGLPK QTPVTFKETV DAVLAMNPDR LSVYNYAHLP HIFKPQRRIA EADLPPAADK LDILSNTIKR LGEAGYVFIG MDHFAKPNDE LAIAQKEGKL HRNFQGYSTR AECDLLAFGI SSIGKVDDCY SQNVRTLDEY YEALDSGHLP VLRGLRLDQD DLMRRELIGE LMCQFALDTK SFAKTHQIDF PTYFKTEIEE LKGLGEVGLL DWEGETILVP TKGRLLARRV AMTFDRHLRE SQAKGTYSKV L
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