Gene Pnec_1129 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_1129 
Symbol 
ID6183331 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp984436 
End bp985851 
Gene Length1416 bp 
Protein Length471 aa 
Translation table11 
GC content45% 
IMG OID641671732 
Productoxygen-independent coproporphyrinogen III oxidase 
Protein accessionYP_001797909 
Protein GI171463796 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 
TIGRFAM ID[TIGR00538] oxygen-independent coproporphyrinogen III oxidase 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones56 
Fosmid unclonability p-value0.101804 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACTTCG CAGTGAATCC ATCATCAATC GAAGATAAGG ATGTCTTATT TCATCCTGAG 
CTACTGAAAA AATTTGATAT TAATGGCCCT CGCTATACCT CTTACCCTAG TGCCGATCGC
TTTCATGGTG ACTTTGCCGA AGCAGATTAC CTAGGTGCCC TAGAGAGAGT CGCAAAAGCG
GATGAGCCTC TGTCCTTATA TTTTCATCTG CCGTTTTGCC CCAATATTTG CTATTACTGT
GGTTGCAACA AAATTATTAC CAAAGACCAT GGACGTAGTG CCAAATACAT TAAGTATCTA
TCCAAAGAAA TGGCCATGGT TACTAAAGCT ATGGGTGCTC AGAAAAAGAT TCTGGTATCC
CAGTTGCATT GGGGTGGCGG CACACCGACC TTCTTATCTC ATGAAGAGAT GATTGAGCTT
ATGCACCACA CCCGCGAGCA TTTTGAATTG CTGCCCGGTG GTGAGTACTC AATTGAGATT
GATCCTAGGC GGGTTACAGA AAAAGATATC GCGCTTTTGG CTGAATTGGG TTTCAATCGC
ATCAGTCTTG GTGTGCAAGA CTTTAATTTA GCGGTACAAG AGGCGGTCCA TCGCGTTCAA
ACCATTGAGG AAACTCAAGC GGTGATAAAT TGGTCCCGAA AGTATGGCTT TAAATCACGT
AGCGTAGATT TAATCTATGG ACTTCCCAAG CAGACACCGG TAACCTTTAA AGAAACGGTT
GATGCGGTAT TGGCAATGAA TCCTGATCGC TTATCAGTTT ATAACTATGC GCACTTGCCG
CATATCTTTA AACCTCAGCG TCGCATTGCT GAAGCAGACT TGCCGCCAGC CGCAGATAAA
TTAGACATTC TTTCAAATAC GATTAAGCGT CTGGGTGAAG CTGGTTATGT CTTTATCGGC
ATGGATCATT TTGCAAAGCC CAACGATGAA TTGGCGATTG CACAAAAAGA AGGAAAGCTC
CATCGTAATT TCCAGGGTTA CTCTACTCGG GCAGAGTGTG ATCTATTGGC GTTTGGTATT
TCTTCTATTG GCAAGGTCGA TGACTGCTAT TCCCAGAATG TGCGTACTTT AGATGAGTAT
TACGAAGCGC TTGATAGCGG ACATTTGCCA GTTCTACGTG GCCTGCGCCT GGATCAGGAT
GATCTCATGC GCCGCGAGTT AATTGGTGAG TTGATGTGTC AATTTGCCTT GGATACGAAG
TCCTTTGCAA AAACACATCA GATTGATTTC CCAACTTACT TCAAAACCGA GATAGAAGAG
TTAAAGGGCC TGGGTGAAGT TGGACTCCTG GATTGGGAGG GGGAAACCAT CTTGGTTCCA
ACTAAGGGGC GTCTGCTTGC AAGGCGAGTG GCCATGACCT TTGATCGACA CCTCAGGGAA
TCTCAGGCAA AAGGCACTTA CTCCAAGGTT TTATAG
 
Protein sequence
MNFAVNPSSI EDKDVLFHPE LLKKFDINGP RYTSYPSADR FHGDFAEADY LGALERVAKA 
DEPLSLYFHL PFCPNICYYC GCNKIITKDH GRSAKYIKYL SKEMAMVTKA MGAQKKILVS
QLHWGGGTPT FLSHEEMIEL MHHTREHFEL LPGGEYSIEI DPRRVTEKDI ALLAELGFNR
ISLGVQDFNL AVQEAVHRVQ TIEETQAVIN WSRKYGFKSR SVDLIYGLPK QTPVTFKETV
DAVLAMNPDR LSVYNYAHLP HIFKPQRRIA EADLPPAADK LDILSNTIKR LGEAGYVFIG
MDHFAKPNDE LAIAQKEGKL HRNFQGYSTR AECDLLAFGI SSIGKVDDCY SQNVRTLDEY
YEALDSGHLP VLRGLRLDQD DLMRRELIGE LMCQFALDTK SFAKTHQIDF PTYFKTEIEE
LKGLGEVGLL DWEGETILVP TKGRLLARRV AMTFDRHLRE SQAKGTYSKV L