| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1088 |
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| Symbol | aceE |
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| ID | 6183228 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 944921 |
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| End bp | 947617 |
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| Gene Length | 2697 bp |
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| Protein Length | 898 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641671699 |
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| Product | pyruvate dehydrogenase subunit E1 |
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| Protein accession | YP_001797876 |
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| Protein GI | 171463763 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG2609] Pyruvate dehydrogenase complex, dehydrogenase (E1) component |
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| TIGRFAM ID | [TIGR00759] pyruvate dehydrogenase E1 component, homodimeric type |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00000843212 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 64 |
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| Fosmid unclonability p-value | 0.805293 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGCGG TTCCAGACCA AGTACTAGGT AAACAGAATG TCCAGGATGC AGATCCTGGC
GAGACTCAAG AATGGTTGCA AGCGCTTGAT GGCGTGATTC GCAATGGAGG TCCCGAGAGA
GCTGCTTATC TGATTGATCA GCAGATTTCT CATGCGCGTG TAAACGGAGT GGTGCAGCCT
TTCCATGTTG AGACTTCTTA CATCAATACG ATCCCTGTAG AAAATCAAGC GCGCTTACCG
GGCGATCAGA ATGTAGAGCA TCGTATTCGT TCATACACTC GCTGGAATGC CATGGCGATG
GTGTTGCGTG CCAATAAGGA CACCAACGTT GGTGGGCATA TTTCATCTTT TCAGTCTGCA
GCAACTTTGT ATGACGTTGG CTTTAATCAC TTCTGGCATG CACCTTCTCC AGAGCATGGA
GGTGATTTGA TATTTGTTCA GGGTCACTCA GCTCCAGGGG TATATGCACG CGCTTATATG
TTGGGTCGAC TTGAAGAAGG TCAACTCAAT AACTTCCGTC AAGAGGTTGG CGGTAAAGGA
ATCTCTAGCT ATCCACATCC TTGGTTGATG CCGGACTTTT GGCAGTTCCC AACAGTATCC
ATGGGCCTAG GCCCGATCAT GGCGATTTAC CAAGCACGCT TCATGAAGTA CCTCACAGAC
CGCGGCTTCA TTCAGGAACA AGGTCGTAAG GTTTGGGCTT TTTTAGGTGA TGGTGAAACT
GATGAGCCAG AATCATTAGG TGCGATTAGC ATGGCCGGTC GTGAAAAACT CGACAATCTG
ATTTTTGTAA TTAACTGTAA CCTGCAGCGC TTGGATGGAC CAGTACGCGG TAACGGAAAG
ATTATTCAAG AACTCGAGGG TGAGTTCCGC GGTGCTGGCT GGAATGTCAT TAAGGTAGTG
TGGGGTGGGC AATGGGATGC ATTATTTGCA CGCGATAAAA AAGGCATATT GATGCAGCGT
TTGGGCGAGA TCGTTGATGG TCAGTACCAG ACAATGAAGT CTAAGAATGG CGCCTATGTC
CGTGAGATCG TTTTCAATAC CCCAGAATTA AAAGCCTTAG TAAGTGACTG GAGTGATGAT
GGGATCTGGC AGCTGAATCG TGGCGGTCAT GATCCTCACA AAGTATTTGC AGCGTTTCAT
GCTGCAGTAA ATCATAAAGA GCAGCCAACG GTTATCTTGG CACATACTAT TAAGGGTTAC
GGTATGGGAG GCTCTGGTGA GGCGATGAAT ATTGCTCACC AGGCGAAGAA GATGAATGCA
GACGATGTGC GTCGCTTCCG TGATCGCTTT GAAATTCCAG TTAAAGATGA GCAGTTAGAT
GAAATGCCTT TGGTGAAATT TGCTGAAGGC AGTCCAGAGT TTGAGTATAT GAAAGCGCGT
CGCCAGGAAT TGGGCGGTTA TCTGCCGCAG CGTCGCATGA AAGCAGAGAG CTTGCCTGTG
CCAGCATTAG ATGCTTTTGC TCCGCTGCTT GAAGCAACTA CAGAAGGGCG CGAGATCTCA
ACAACGATGG CCTTTGTGCG CATGCTCAAC ACCGTAGTGC GCGATAAGGT TCTGGGCAGG
CGTGTGGTTC CAATTGTCCC AGATGAGTCT CGTACTTTTG GTATGGAGGG CATGTTCCGC
CAATTGGGTA TCTGGAATCA ATTGGGTCAG CTATACATAC CAGAAGATCA TGATCAATTG
ATGTTCTACA AAGAGGATAA GACCGGTCAA ATTCTGCAAG AGGGTATTAA TGAAGCGGGT
GGTATGTGCG ATTGGATCGC GGCTGCAACT TCTTACTCTA CGCATGGCGT GCCAATGCTG
CCTTTTTATA TTTTCTACTC TATGTTCGGT TTCCAGCGTA TTGGCGACTT AGCTTGGGCA
GCGGGTGATA TGCGTAGTCG TGGCTTCTTG CTAGGTGGTA CCGCTGGTAG AACCACTTTG
AATGGTGAAG GCTTGCAGCA CGAAGATGGC CACAGCCATT TATGGAGTGG TGCAGTGCCG
AATTGCATCA GCTATGACCC TACATTCTCT TTTGAATTGG CAGTAGTAAT TCAGGATGGT
ATGCGTCGGA TGTTGGAGGT TCAGGAAGAT GTTTATTACT ACGTTACATT GATGAATGAG
AATTACGCTC ATCCAGCAAT GCCAAAGGGC GCAGAACAAG ACATCATTAA AGGGATGTAT
AAGCTCAAGT CGGTTGGTGA TGCTAACGCA AAACTGCGCG TACAACTTTT GGGTTCAGGC
ACTATCTTCC GCGAAGTAAT TGAAGTTGCA GAAATTCTGC ACAAAGACTG GGGCATTGCT
TCTGATCTTT GGGGTTGCCC AAGCTTTACT GAGTTAGGAC GTGATTGGAC GGCAGTACAC
CGTAGCAATC TCTTGAACCC GGCTGCAGCT CCAGCCTTAT CTCATGTTGA AAAGTGCTTA
AAAGATACCG CCGGTCCAGT GATTGCCGCC ACTGACTATG TTCGTTTATT TGCAGAGCAA
ATTCGTCCAG CGATTCAGCA TATGGGCCGT CGTTATGAAG TGCTCGGTAC CGATGGTTTT
GGCCGATCAG ATACCCGTGA AAAACTCCGT GATTTCTTTG AAGTGGATCG TCGTTGGGTA
GTCTTGACTG CTTTGAGATC TTTGGTCGAC TCTGGTCAGC TTGATCGCTC TAGGTTGGCG
GAAGCGATTA AGAAATACGA TATCGACACC ACTAAACCAA ACCCAATGAC GGTTTGA
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| Protein sequence | MAAVPDQVLG KQNVQDADPG ETQEWLQALD GVIRNGGPER AAYLIDQQIS HARVNGVVQP
FHVETSYINT IPVENQARLP GDQNVEHRIR SYTRWNAMAM VLRANKDTNV GGHISSFQSA
ATLYDVGFNH FWHAPSPEHG GDLIFVQGHS APGVYARAYM LGRLEEGQLN NFRQEVGGKG
ISSYPHPWLM PDFWQFPTVS MGLGPIMAIY QARFMKYLTD RGFIQEQGRK VWAFLGDGET
DEPESLGAIS MAGREKLDNL IFVINCNLQR LDGPVRGNGK IIQELEGEFR GAGWNVIKVV
WGGQWDALFA RDKKGILMQR LGEIVDGQYQ TMKSKNGAYV REIVFNTPEL KALVSDWSDD
GIWQLNRGGH DPHKVFAAFH AAVNHKEQPT VILAHTIKGY GMGGSGEAMN IAHQAKKMNA
DDVRRFRDRF EIPVKDEQLD EMPLVKFAEG SPEFEYMKAR RQELGGYLPQ RRMKAESLPV
PALDAFAPLL EATTEGREIS TTMAFVRMLN TVVRDKVLGR RVVPIVPDES RTFGMEGMFR
QLGIWNQLGQ LYIPEDHDQL MFYKEDKTGQ ILQEGINEAG GMCDWIAAAT SYSTHGVPML
PFYIFYSMFG FQRIGDLAWA AGDMRSRGFL LGGTAGRTTL NGEGLQHEDG HSHLWSGAVP
NCISYDPTFS FELAVVIQDG MRRMLEVQED VYYYVTLMNE NYAHPAMPKG AEQDIIKGMY
KLKSVGDANA KLRVQLLGSG TIFREVIEVA EILHKDWGIA SDLWGCPSFT ELGRDWTAVH
RSNLLNPAAA PALSHVEKCL KDTAGPVIAA TDYVRLFAEQ IRPAIQHMGR RYEVLGTDGF
GRSDTREKLR DFFEVDRRWV VLTALRSLVD SGQLDRSRLA EAIKKYDIDT TKPNPMTV
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