| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1062 |
|---|
| Symbol | |
|---|
| ID | 6182849 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 924945 |
|---|
| End bp | 925310 |
|---|
| Gene Length | 366 bp |
|---|
| Protein Length | 121 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641671674 |
|---|
| Product | succinate dehydrogenase, hydrophobic membrane anchor protein |
|---|
| Protein accession | YP_001797851 |
|---|
| Protein GI | 171463738 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2142] Succinate dehydrogenase, hydrophobic anchor subunit |
|---|
| TIGRFAM ID | [TIGR02968] succinate dehydrogenase, hydrophobic membrane anchor protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.384103 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 54 |
|---|
| Fosmid unclonability p-value | 0.0341549 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTATTT ATCAAATTGG ACCAAAGCGC TTAGTTGTCG GCGCACACTA CGGCCTTAAA
GAATGGATCA TCCAGTGTGT TACTGCGATT GTGATGGTGG TATTTACGGT TGTTTTATTG
GTTGACTACT GCATCACTGG CAGCGCCACC TATGAGGGTT GGTCTGGCTT ATTTAGCAGT
CAAGTAATGA AGTTATTAAC GCTGTTGGCA TTCATCAGCT TGTTCTATCA CGCCTGGATT
GGCGTTCGTG ACATCTGGAT GGATTACATC AAGCCCGTTA GCGTTCGTTT AACACTCCAA
GTGTTGACTG TTTTATATCT CGTAGCCTGT GCGGCGTACG CCGTTCAAAT TTTGTGGAAA
GTGTAA
|
|---|
| Protein sequence | MPIYQIGPKR LVVGAHYGLK EWIIQCVTAI VMVVFTVVLL VDYCITGSAT YEGWSGLFSS
QVMKLLTLLA FISLFYHAWI GVRDIWMDYI KPVSVRLTLQ VLTVLYLVAC AAYAVQILWK
V
|
|---|
| |