Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnec_1051 |
Symbol | truA |
ID | 6183614 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
Kingdom | Bacteria |
Replicon accession | NC_010531 |
Strand | - |
Start bp | 913883 |
End bp | 914713 |
Gene Length | 831 bp |
Protein Length | 276 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641671663 |
Product | tRNA pseudouridine synthase A |
Protein accession | YP_001797840 |
Protein GI | 171463727 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0101] Pseudouridylate synthase |
TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 60 |
Fosmid unclonability p-value | 0.238902 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTATAG CCCTTGGACT TCAGTACGAC GGCAGCCCAT ATTCCGGTTG GCAAACCCAG GTTAATCACA ATACAGTGCA GAATGAATTA GAAAAAGCCA TTTCTGCTTT TGTTGGTGAG CAGGCCTGTG TAGTGAAACC TATTAATACA ATCACTGCTG GAAGAACCGA TACTGGTGTT CACGCCTTAG GGCAGGTGGT TCACTTTGAT ACCAATGTTG AGCGCGAAGA CTTCTCATGG GTGAGGGGGG TGAACTCATT CCTGTCATCA TCTATTGTCA TTAACTGGGC GAAGCCTGTC TCGGAAGAAT TCTGTGCACG TTTTTCAGCT TATGAGCGTG AATATATTTA TGCATTGCAT GCTGGACCGT GTCGCTCACC AATGGCTCAT TCGCGTGCTG GTTATTTAAT GCTTCCACCA AGTCAATGGT TCGACATTGA GGCGATGCAA AAATCTGCTG AGTGTTTAAT TGGTGAGCAT GATTTCAGTT CGTTTCGATC ATCTGAGTGT CAGAGCAAAA CGCCAATCAA AACGATCTAT TTGATTGAGA TTATTTCTAA GCAACCTTGG CTGTATTTCC GTATCCGAGG AAATGCCTTT TTGCATCATA TGATCCGCAA TCTTGTTGGA TGCTTTTTGC AAATTGGTCA AGGCAAGCAA ACATCGCAAT GGATGGCAGA GGTTTTGGCT GCCAAAAATA GGCAAATTGC AGCCCCGACT TTTATGGCTG ATGGCTTGTA TTTGGCAAAA ATTACCTATC CACAGGAATT TGCGATCCCG CAGCCTTGGC TGAAAAGCTC CTGGCTACCC GCTCAGGTTA TCGGGAAATA A
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Protein sequence | MRIALGLQYD GSPYSGWQTQ VNHNTVQNEL EKAISAFVGE QACVVKPINT ITAGRTDTGV HALGQVVHFD TNVEREDFSW VRGVNSFLSS SIVINWAKPV SEEFCARFSA YEREYIYALH AGPCRSPMAH SRAGYLMLPP SQWFDIEAMQ KSAECLIGEH DFSSFRSSEC QSKTPIKTIY LIEIISKQPW LYFRIRGNAF LHHMIRNLVG CFLQIGQGKQ TSQWMAEVLA AKNRQIAAPT FMADGLYLAK ITYPQEFAIP QPWLKSSWLP AQVIGK
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