| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1015 |
|---|
| Symbol | |
|---|
| ID | 6184079 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | + |
|---|
| Start bp | 886009 |
|---|
| End bp | 887679 |
|---|
| Gene Length | 1671 bp |
|---|
| Protein Length | 556 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641671633 |
|---|
| Product | Electron-transferring-flavoprotein dehydrogenase |
|---|
| Protein accession | YP_001797810 |
|---|
| Protein GI | 171463697 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0644] Dehydrogenases (flavoproteins)
[COG2440] Ferredoxin-like protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.103701 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 64 |
|---|
| Fosmid unclonability p-value | 0.772735 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGCTG CAGAGCTGGT TGAGCAATTT GGTCCTAGAG ACTCCATGGA CTATGACCTG
GTCATCGTTG GTGGTGGGCC CGCAGGCCTC TCCGCCGCCA TTAAAGCTAA GCAACTAGCC
AACTCCTCAG GCAAAGAAAT TAGCGTTTGC GTTCTGGAAA AAGGCTCTGA AATCGGAGCA
CACATTCTTT CAGGTGCCGT GATGGACCCC AAAGCGCTTA CTGAATTATT TCCCAACTGG
AAAAAATTAG GCGCCCCACT AAATACGGAA GTCACTCAAG ATCAGTTTTT ATTCTTGACT
AGCGAGAAGT CATATCAAGT TCCCAATTGG ATGTTGCCGA ATTGCTTTAA GAATGAAGGC
AACTACATTG TGAGTCTTGC AAACGTGACT CGTTGGCTTG GTCAACAAGC AGAAAATCTC
GGCGTTGAAA TCTTTCCTGG TTTTCCAGCA GCAGAAATTC TCTATAACGA ACAAGGCGCT
GTATGCGGAG TCGTCACCGG CTCCATGGGC TTGGATAAGG AAGGTAATCC AACCGATCAG
TTTCAGCTCG GCATGGAATT GCGTGGCAAG TACACCCTAT TCGCCGAAGG TTCACGAGGC
CACCTCGGCA AGCAACTTAT TTCTAAATTT GCATTAGATA AAGAAGCTGA TCCGCAAAGC
TACGGTATTG GCATCAAGGA GCTGTGGGAA GTTGAGCCCT CCAAGAGTAA GCCGGGTCTC
GTAGTGCACA CGGCTGGCTG GCCTTTAGAG AGCGATACCT ATGGTGGGTC ATTCCTCTAT
CACTTAGGTG ATAACAAGGT TGCAGTCGGC TTGGTGGTGG GCCTTTCCTA CAAGAATCCC
TACCTCTCCC CTTTTGAAGA ATTTCAACGC TATAAGTTGC ACCAAAAAAT TCGCGAGACT
TTTGAAGGCG GCAAACGCAT TGCCTATGGA GCACGCGCAC TAACTGCAGG CGGATTAAAC
AGCCTTCCAA AAACAGTATT TCCTGGTGGC GCATTGATTG GTTGCGATGC TAGCTTCCTC
AATGCCTCAC GCATCAAAGG CAGTCATGCC GCGATTAAGA CGGGTATGCT GGCTGCAGAA
GCAGCAGTAG CGGCCATTAA TGAAAATCGC TCTGAAGATG TTTTGTCCGC ATACCCTACC
GCCTTTCAAA ATAGTTGGCT GCATACAGAA CTTAATCAAG CCCGTAATTT CAAACCCTGG
ATGTCTAAAG GTCTCTACGT TGGCACGGTA ATGGTTGGCT TAGAACAAAA ACTATTAGGC
GGTAATATGC CGTGGACAGT GCATCTAAAG CATGCTGATC ATGAGTGTCT AGAACCAGCC
TCTCAACATC AGCCAATCGA TTATCCAAAA CCGGATGGCA AGATTACATT TGATCGACTT
TCTTCTGTAT TTATCTCCAA TACAAACCAT GCCGAGAACC AGCCTATTCA CCTAACGTTG
AAGGATGACT CTATTCCAGT GGATGTGAAC CTCAAAACCT ACGCGGGCCC GGAACAACGT
TACTGCCCTG CTGGTGTATA CGAGTTTGTA GAAACTGATG GCAAAGCGCG GCTGCAAATC
AATTCGCAAA ACTGCGTACA TTGCAAGACG TGTGACATCA AGGACCCCTC TCAAAACATC
GTATGGGTTA CACCGAAAGG CGGTGGTGGA CCAAACTACG CAGCCATGTA A
|
|---|
| Protein sequence | MNAAELVEQF GPRDSMDYDL VIVGGGPAGL SAAIKAKQLA NSSGKEISVC VLEKGSEIGA
HILSGAVMDP KALTELFPNW KKLGAPLNTE VTQDQFLFLT SEKSYQVPNW MLPNCFKNEG
NYIVSLANVT RWLGQQAENL GVEIFPGFPA AEILYNEQGA VCGVVTGSMG LDKEGNPTDQ
FQLGMELRGK YTLFAEGSRG HLGKQLISKF ALDKEADPQS YGIGIKELWE VEPSKSKPGL
VVHTAGWPLE SDTYGGSFLY HLGDNKVAVG LVVGLSYKNP YLSPFEEFQR YKLHQKIRET
FEGGKRIAYG ARALTAGGLN SLPKTVFPGG ALIGCDASFL NASRIKGSHA AIKTGMLAAE
AAVAAINENR SEDVLSAYPT AFQNSWLHTE LNQARNFKPW MSKGLYVGTV MVGLEQKLLG
GNMPWTVHLK HADHECLEPA SQHQPIDYPK PDGKITFDRL SSVFISNTNH AENQPIHLTL
KDDSIPVDVN LKTYAGPEQR YCPAGVYEFV ETDGKARLQI NSQNCVHCKT CDIKDPSQNI
VWVTPKGGGG PNYAAM
|
|---|
| |