Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnec_0940 |
Symbol | |
ID | 6184156 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
Kingdom | Bacteria |
Replicon accession | NC_010531 |
Strand | - |
Start bp | 814773 |
End bp | 817148 |
Gene Length | 2376 bp |
Protein Length | 791 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641671568 |
Product | DNA topoisomerase IV subunit A |
Protein accession | YP_001797750 |
Protein GI | 171463637 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit |
TIGRFAM ID | [TIGR01062] DNA topoisomerase IV, A subunit, proteobacterial |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 71 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGATGTGG TTGAAGTAAG TGAAACTCCG ACCTTAGCAG CGTCATCAGG CGGCGGATCG GGCAACCATG ATCCCAAACC AATTGACCTC AATGAGGATG GTAAAGATAG CTTAACGCTC GCGGTATATG CTGAGCGCGC TTATTTAGAT TACGCCATCA GCGTTGTGAA AGGTCGCGCT CTCCCTGATG TTTCTGACGG CCAAAAACCT GTTCAGCGCC GTATTTTGTT CTCCATGAGC GAAATGGGTT TGCGTGCAGA TGCAAAGCCG GTAAAGAGCG CTCGTGTAGT TGGTGATGTG CTGGGTAAAT TTCATCCGCA TGGCGACCAA TCTGCTTACG ATGCTTTAGT TCGCTTGGCG CAAAGTTTTT CACTGCGCTA TCCATTGATC GATGGCCAAG GTAACTTCGG CTCACGCGAT GGCGATGGTG CGGCGGCGAT GCGATATACC GAGGCGCGCC TTACCAAAAT CGCTGGCTTA CTTTTAAGTG AGATAGACGA GGGCACAGTA GATTTCGCGC CAAACTACGA TGGTTCATTC CAGGAGCCCA AGCTTCTGCC AGCGCGTTTG CCATTTGTAT TGCTTAACGG TGCTTCAGGT ATTGCCGTGG GTATGGCTAC TGAGATTCCA TCGCACAACT TGCGTGAAGT AGCTTTGGCA GCAGTGGCGT TGATGAAGTC TCCAAAAATG AGTACTTCAG AGTTGCTCGA GATTATGCCG GGTCCTGATT ACCCAGGCGG CGGACAAATT ATTTCTTCTG CCGCAGAAAT TGCGCAGATT TACGAAACAG GGCGTGGCAG CATAAAAGTG CGTGCTCGTT GGTCAATCGA AGAATTGGCC CGTGGCCAAT GGCAAATTGT TGTTAATGAG TTGCCGCCAG CGACTTCTTC TCAGCGGGTG TTGCAAGAGA TTGAAGAGAT TACCAATCCG AAGGTTAAGG TTGGCAAAAA GACTCTCACG CTTGAGCAAA ACAACCTTAA ATCGACCATT CTGAATGTGC TCGACGGTGT GCGCGATGAA TCTAGTAAGG ATGCTGCTGT GCGTCTGGTA TTTGAGCCTA AAAGCAAGAA TATTGACGTC AATGAGTTTG TAAATCTTTT GCTTGCCCAT ACTTCATTGG AGTCCAATGC GCCAATGAAC TTAGTGATGA TCGGTAACGA TGATCGTCCA CGTCAAAAAG GCTTAAAAGA AATCCTCTCT GAGTGGATCG TGTTTAGGGT TACTACAGTT ACGCGCAGAA CCCAGCACCG CTTAGATAAA GTTAAAAACC GTATGCATAT TTTGGAAGGG CGTTTAACCG TTCTTCTCAA TATCGACAAG GTTATTAAGA TCATTCGCAA TAGCGATGAG CCAAAAGCGG ATTTAATTAA AGAATTCAAG TTGAGCGATC GTCAAGCCGA AGATATTTTA GATATTCGTT TGCGTCAGTT GGCTCGCCTG GAAGGCATCA AAATTGAGCA AGAGCTTAAA GAGCTTAAAA CTGAACGTGA TGACCTAGAG GGTTTATTGC AAAGCGATAC CGCCTTGCGC AAGCGTATCA TCAAAGAAAT CGAATCCGAT ATGAAGGATT TTGGCGATGA TCGTCGCACA TTAATTCAGG AAGATAAGCG TGCTGTTGCT GAGACCAAAG TGATTGATGA GCCGGTAACG GTGATTGTTT CGCAAAAAGG TTGGGTGCGA GTACGTCAAG GTCATGAGCA TGATCCAACA CAATTTAGCT TTAAAGCGGG TGATGCTTTG TACGCTACCT TTGAGGTAAG AACGGTCGAC GTTATTCAAG GATTTGGAAG CGATGGTCGT GTTTACACCG TTCCTGTTAG TGAATTGCCT GGCGCTCGTG GCGACGGGTC ACCTCTGACT AGTTTTGTAA ACTTAGCCTC AGGCTCACAA ATGGTTGCTT ATTATGCTGG CCAGTCTGAT GATTTGGTAT TGCTATCCAC TAAAGCGGGA TTTGGATTTT TGGCTAATGT TGCTGATATG ACCACCCGTA ACAAGGCGGG CAAATCTTTC TTGAGTATGG ATGCGAAGGT GCCTGGAGAT GCGCCTTTGG GAGCAGCAAA AGTCAGAGTG GGTATGAAGC AAGTAGCATG CTTATCTGAA GCCTCTAAAT TATTAGTCTT CCCATTAGAT GAGCTCAAAC GGTTGCCAAC TGGTGGCAAA GGCGTCATCC TCATGGGCCT AGATGACAAT GAATTCTTGG CATCAGCAAT CGCCGTTGGT CCAGATGGAG CTACTTATTC AGGCGCAGGA CGAGCTGGCA AACCAACTGA ACTAGGCTTA GACGCAAAAA CTTTGAAGTC GTTTGCGGGT AATCGTGCAC GTAAAGGTCA CTTTGTGGAA CCTCGTCTAA AAGACGGTAA GTTAACAGCA AACTAA
|
Protein sequence | MDVVEVSETP TLAASSGGGS GNHDPKPIDL NEDGKDSLTL AVYAERAYLD YAISVVKGRA LPDVSDGQKP VQRRILFSMS EMGLRADAKP VKSARVVGDV LGKFHPHGDQ SAYDALVRLA QSFSLRYPLI DGQGNFGSRD GDGAAAMRYT EARLTKIAGL LLSEIDEGTV DFAPNYDGSF QEPKLLPARL PFVLLNGASG IAVGMATEIP SHNLREVALA AVALMKSPKM STSELLEIMP GPDYPGGGQI ISSAAEIAQI YETGRGSIKV RARWSIEELA RGQWQIVVNE LPPATSSQRV LQEIEEITNP KVKVGKKTLT LEQNNLKSTI LNVLDGVRDE SSKDAAVRLV FEPKSKNIDV NEFVNLLLAH TSLESNAPMN LVMIGNDDRP RQKGLKEILS EWIVFRVTTV TRRTQHRLDK VKNRMHILEG RLTVLLNIDK VIKIIRNSDE PKADLIKEFK LSDRQAEDIL DIRLRQLARL EGIKIEQELK ELKTERDDLE GLLQSDTALR KRIIKEIESD MKDFGDDRRT LIQEDKRAVA ETKVIDEPVT VIVSQKGWVR VRQGHEHDPT QFSFKAGDAL YATFEVRTVD VIQGFGSDGR VYTVPVSELP GARGDGSPLT SFVNLASGSQ MVAYYAGQSD DLVLLSTKAG FGFLANVADM TTRNKAGKSF LSMDAKVPGD APLGAAKVRV GMKQVACLSE ASKLLVFPLD ELKRLPTGGK GVILMGLDDN EFLASAIAVG PDGATYSGAG RAGKPTELGL DAKTLKSFAG NRARKGHFVE PRLKDGKLTA N
|
| |