| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0921 |
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| Symbol | |
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| ID | 6183593 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 797196 |
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| End bp | 798230 |
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| Gene Length | 1035 bp |
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| Protein Length | 344 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641671551 |
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| Product | pseudouridine synthase, RluA family |
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| Protein accession | YP_001797733 |
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| Protein GI | 171463620 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 81 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCATTGC CGCAAACTCC TGAATCTAAT CCCATTGATT ATATCGATGA TGAGGATTTC
ATCTCCCTAG AAATACCTTT AAAGATGGCT GGCGAGCGCT TGGATAAGGT ATTGGTCGGC
ACTTTGCCCG ATTATTCGCG TAATCGCTTA AAGACCTGGG TTGAGGCGGG GGCTGTAATG
GTTGATGGGA AAGTCACCAA AGCCCGTTAT TTGCTACGCG GAGGGGAAAG TATTAAGGTA
TTCCCACAAG AAATGCCTGA GCAGTTCGCC TTTAACCCGG AAGATATTCC GTTAGACGTT
GTTTATGAGG ATGGGGACAT CATTGTCATT AATAAACCGC CAGGTTTGGT GGTCCATCCG
GCTGCTGGTA ACTGGTCTGG AACATTGCTG AATGGTCTCT TATTTCGTTA TCCGGAGCTC
AAAATGTTCC CAAGGGCGGG AATTGTTCAT CGCCTAGATA AAGACACCTC GGGTTTAATG
GTCGTCGCAA GAACCTCTCA AGCGCAGACT TCCTTGGTGC GCCAGCTCCA AGATAGAACA
GTTGGACGTC GCTATCTTGC CTGGGTGTGG GGCGATGCTC CCAGTCAAGG TAAAGTTCTA
GCTTCAGTGG GTCGGGATCA GCGAGATCGC CTCAAAATGG CCGCTGGTAG CCCACAAGGT
AAACCTGCCG CCACCTTATT TAGGCGGTTG TCTAAAGGAC TTGTACAAGA GACCCCCGTG
ACCCTATTGG AGTGTCGTCT TGAGACTGGT CGCACCCATC AAATTAGAGT ACACTTTGAG
TCTCTGGGAT TTCCTCTGGT TGGTGATCCG GTGTATCGTA AAAAAACACC TGGCGCCGCC
AACAATCTTG AATTTAAGCG ACAAGCTTTG CATGCGTTTG CATTAAGTCT TCAGCATCCC
GCAAGGAATG AAGTGATGAC TTGGTTCCGA CTTCCGCCGC AGGACATACT GGAATTGCTG
CCGCAATTGG GAATGAGTGA AGAAGTTTTG CCTAAAGAAT CAGTTGTTTT AGCCTCAATT
CAAAACGAAT CTTAG
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| Protein sequence | MALPQTPESN PIDYIDDEDF ISLEIPLKMA GERLDKVLVG TLPDYSRNRL KTWVEAGAVM
VDGKVTKARY LLRGGESIKV FPQEMPEQFA FNPEDIPLDV VYEDGDIIVI NKPPGLVVHP
AAGNWSGTLL NGLLFRYPEL KMFPRAGIVH RLDKDTSGLM VVARTSQAQT SLVRQLQDRT
VGRRYLAWVW GDAPSQGKVL ASVGRDQRDR LKMAAGSPQG KPAATLFRRL SKGLVQETPV
TLLECRLETG RTHQIRVHFE SLGFPLVGDP VYRKKTPGAA NNLEFKRQAL HAFALSLQHP
ARNEVMTWFR LPPQDILELL PQLGMSEEVL PKESVVLASI QNES
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