Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnec_0871 |
Symbol | |
ID | 6184397 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
Kingdom | Bacteria |
Replicon accession | NC_010531 |
Strand | + |
Start bp | 746443 |
End bp | 747558 |
Gene Length | 1116 bp |
Protein Length | 371 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641671497 |
Product | chorismate synthase |
Protein accession | YP_001797684 |
Protein GI | 171463571 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0082] Chorismate synthase |
TIGRFAM ID | [TIGR00033] chorismate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.205918 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 65 |
Fosmid unclonability p-value | 0.59922 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAGGAA ATACTTTAGG CCTTCTCTTT ACTGTTACCA CTTTTGGCGA ATCCCATGGT CCAGCCATCG GTGCCGTTGC TGATGGTTGC CCACCTGGAA TGCTGCTTAC TGAAGCAGAT ATTCAGTTGG ATTTGGACCG CCGCAAACCA GGGACCTCAA GGCACGTTAC TCAGCGCAAG GAAGAGGATA AAGTTGAAAT TCTTTCTGGT GTATTTGAGG GTAAAACAAC GGGAACCCCT ATTGCATTGT TAATTCGCAA TACTGATCAA CGTAGCCAAG ACTACGGTGA TATCTTGCAA ACGTTTCGCC CTGGTCATGC TGATTACGCA TACCAATATA AATATGGAAT TCGCGACCCT CGCGGTGGCG GCAGATCATC AGCGCGCTTA ACTGCGCCCG TAGTAGCTGC TGCCGTAATT GCAAAAAAAT GGTTGCATGA GAAATATGGT ACCGAGTTCT ATGGCTATAT GAGTCAGTTG GGAGAGCTTG AGATTCCATT CAAAGATGCT TCTGAGATTG AAAAGAATCC ATTCTTTGCT GCAAATGCAG AGTTAATCCC TCAGCTAGAA ACCTACATGG ATGAGTTACG CAGGGCGGGG GACTCTTGTG GTGCGCGTAT TGAAGTTCGT GCCCGTAATG TACCAGCTGG TCTAGGCGAA CCGTTATTCG ATAAATTGGA TGCTGACATT GCGCATGCCA TGATGGGAAT TAATGCGGTT AAAGGTGTAG AGATTGGCGC TGGTTTTAGA TCAGTTGTTC AGCGTGGTAG TGAGCATGGT GATGAGCTTC ATTCCGATGG TTTTGCTAGC AATAATTCTG GCGGCACTCT TGGCGGCATT AGTAGCGGCC AAGATTTAAG AGTATCAATA GCGATTAAGC CCACCTCTAG CATTATGAGC CCTAAACAGT CAGTTGATTT GAGCGGAAAG CCTATTATCG TTCAAACTAA AGGTCGTCAT GATCCTTGCG TTGGTATACG TGCAACGCCT ATTGCAGAAG CAATGTTGGC CTTAGTTCTG ATGGATCACG TGCTTCGTCA CCGTGCACAG TGCGCAGACG TTTCAACCTC TATCTCGCCG ATCCCCGCAT CCCAACCAGG GTCATTTCAC GATTGA
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Protein sequence | MSGNTLGLLF TVTTFGESHG PAIGAVADGC PPGMLLTEAD IQLDLDRRKP GTSRHVTQRK EEDKVEILSG VFEGKTTGTP IALLIRNTDQ RSQDYGDILQ TFRPGHADYA YQYKYGIRDP RGGGRSSARL TAPVVAAAVI AKKWLHEKYG TEFYGYMSQL GELEIPFKDA SEIEKNPFFA ANAELIPQLE TYMDELRRAG DSCGARIEVR ARNVPAGLGE PLFDKLDADI AHAMMGINAV KGVEIGAGFR SVVQRGSEHG DELHSDGFAS NNSGGTLGGI SSGQDLRVSI AIKPTSSIMS PKQSVDLSGK PIIVQTKGRH DPCVGIRATP IAEAMLALVL MDHVLRHRAQ CADVSTSISP IPASQPGSFH D
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