| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0661 |
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| Symbol | |
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| ID | 6182836 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 573363 |
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| End bp | 574064 |
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| Gene Length | 702 bp |
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| Protein Length | 233 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641671316 |
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| Product | protein of unknown function UPF0005 |
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| Protein accession | YP_001797512 |
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| Protein GI | 171463399 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0670] Integral membrane protein, interacts with FtsH |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.00649456 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 74 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGATC TGAAATCTTA CGGCTTTGGC CAAACCGGCT CAATTAGCAC CATCCAAGTA
CGCAACCGCG TACTCCGCAA TACCTATGCG CTATTGGCGC TATCTATGGT GCCTACTGTC
ATTGGCGCCT GGCTAGGCGT TGCAATGAGT CTTGACCTCT TTTCAGGCAG CCCTTTCATT
GGGTTTGTCG TGTTTATGGC AGTTGCCTTT GGCTTCTTTT GGGCAATTGA AAAGAATAAA
GATACCGGCG TTGGTGTTCT ACTGCTGCTA GGCTTTACCT TCTTCATGGG CATCATGATG
TCCCGTTTAG TTGGCTTTAC CCTCAATAGC TACAGTAATG GCGCCACCCT CATTATGCTG
TCCTTTGGTG GTACTGCCGC AATCTTCGCC ACCATGGCAA CGATTGCTAC AGTAAGTAAA
AGCGATTTTG CCGGTATGGG CAAATGGCTG ATGGTTGGCG TTCTGCTGCT GATTGTTGCT
TCACTTGCAA ACATTTGGCT ACAGTTGCCT GCATTGATGC TGACAGTCAT GGTCTTGGCT
ATTGGAATCT TCTCAGCCTT CATTCTGGTT GACGTTCAAC GCGTCATCAA TGGCGGTGAG
ACTAACTACA TCATGGCTAC TTTAGCCATC TACTTAGACG TCTATAACGT CTTCACCAAC
CTACTCGCCT TGTTGGGTAT TGTGGGTGGC AACAGAGACT AA
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| Protein sequence | MSDLKSYGFG QTGSISTIQV RNRVLRNTYA LLALSMVPTV IGAWLGVAMS LDLFSGSPFI
GFVVFMAVAF GFFWAIEKNK DTGVGVLLLL GFTFFMGIMM SRLVGFTLNS YSNGATLIML
SFGGTAAIFA TMATIATVSK SDFAGMGKWL MVGVLLLIVA SLANIWLQLP ALMLTVMVLA
IGIFSAFILV DVQRVINGGE TNYIMATLAI YLDVYNVFTN LLALLGIVGG NRD
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